Procedures

Procedure	Location	Procedure Type	Description
Abstract_add	classes_visitable_list	Subroutine
Abstract_add	classes_visitable_cells	Subroutine
Abstract_add	classes_mixture_total_moment	Subroutine
Abstract_add	classes_component_coordinates	Subroutine
Abstract_allocate_coordinates	classes_component_coordinates	Subroutine
Abstract_allocate_strings	classes_rectangle_writer	Subroutine
Abstract_allocate_strings	classes_triangle_writer	Subroutine
Abstract_allocate_strings	classes_line_writer	Subroutine
Abstract_are_outside_box	classes_visitable_walls	Function
Abstract_check_core	classes_box_size_checker	Subroutine
Abstract_check_size	classes_neighbour_cells	Subroutine
Abstract_construct	classes_complete_coordinates_reader	Subroutine
Abstract_construct	classes_beta_pressure_excess	Subroutine
Abstract_construct	classes_external_field	Subroutine
Abstract_construct	classes_reciprocal_lattice	Subroutine
Abstract_construct	classes_box_size_memento	Subroutine
Abstract_construct	classes_walls_visitor	Subroutine
Abstract_construct	classes_visitable_walls	Subroutine
Abstract_construct	classes_hard_contact	Subroutine
Abstract_construct	classes_visitable_list	Subroutine
Abstract_construct	classes_neighbour_cells	Subroutine
Abstract_construct	classes_visitable_cells	Subroutine
Abstract_construct	classes_short_pairs_visitor	Subroutine
Abstract_construct	classes_mixture_total_moment	Subroutine
Abstract_construct	classes_component_dipole_moments	Subroutine
Abstract_construct	classes_box_particle_exchange	Subroutine
Abstract_construct	classes_box_particles_swap	Subroutine
Abstract_construct	classes_box_particle_move	Subroutine
Abstract_construct	classes_tower_sampler	Subroutine
Abstract_construct	classes_changed_box_size	Subroutine
Abstract_construct	classes_move_tuner	Subroutine
Abstract_construct	classes_rectangle_writer	Subroutine
Abstract_construct	classes_triangle_writer	Subroutine
Abstract_construct	classes_real_writer	Subroutine
Abstract_construct	classes_line_writer	Subroutine
Abstract_construct	classes_changes_success_writer	Subroutine
Abstract_construct	classes_complete_coordinates_writer	Subroutine
Abstract_construct	classes_component_coordinates_writer	Subroutine
Abstract_construct	classes_particle_insertion_method	Subroutine
Abstract_construct	classes_volume_change_method	Subroutine
Abstract_construct	classes_maximum_box_compression_explorer	Subroutine
Abstract_construct	classes_dipolar_neighbourhoods_visitor	Subroutine
Abstract_construct	classes_plmc_propagator	Subroutine
Abstract_construct	classes_des_surf_mixture	Subroutine
Abstract_construct	classes_des_self_component	Subroutine
Abstract_construct	classes_des_reci_structure	Subroutine
Abstract_construct	classes_des_reci_weight	Subroutine
Abstract_construct	classes_des_reci_visitor	Subroutine
Abstract_construct	classes_dlc_weight	Subroutine
Abstract_construct	classes_dlc_structures	Subroutine
Abstract_construct	classes_dlc_visitor	Subroutine
Abstract_construct	classes_des_real_component	Subroutine
Abstract_construct_visitable_lists	classes_visitable_cells	Subroutine
Abstract_decrease_delta	classes_exchanged_boxes_size	Subroutine
Abstract_decrease_delta	classes_changed_box_size	Subroutine
Abstract_destroy	classes_complete_coordinates_reader	Subroutine
Abstract_destroy	classes_beta_pressure_excess	Subroutine
Abstract_destroy	classes_external_field	Subroutine
Abstract_destroy	classes_reciprocal_lattice	Subroutine
Abstract_destroy	classes_box_size_memento	Subroutine
Abstract_destroy	classes_walls_visitor	Subroutine
Abstract_destroy	classes_visitable_walls	Subroutine
Abstract_destroy	classes_hard_contact	Subroutine
Abstract_destroy	classes_visitable_list	Subroutine
Abstract_destroy	classes_neighbour_cells	Subroutine
Abstract_destroy	classes_visitable_cells	Subroutine
Abstract_destroy	classes_short_pairs_visitor	Subroutine
Abstract_destroy	classes_mixture_total_moment	Subroutine
Abstract_destroy	classes_component_dipole_moments	Subroutine
Abstract_destroy	classes_box_particle_exchange	Subroutine
Abstract_destroy	classes_box_particles_swap	Subroutine
Abstract_destroy	classes_box_particle_move	Subroutine
Abstract_destroy	classes_radial_explorer	Subroutine
Abstract_destroy	classes_tower_sampler	Subroutine
Abstract_destroy	classes_changed_box_size	Subroutine
Abstract_destroy	classes_move_tuner	Subroutine
Abstract_destroy	classes_rectangle_writer	Subroutine
Abstract_destroy	classes_triangle_writer	Subroutine
Abstract_destroy	classes_real_writer	Subroutine
Abstract_destroy	classes_line_writer	Subroutine
Abstract_destroy	classes_changes_success_writer	Subroutine
Abstract_destroy	classes_complete_coordinates_writer	Subroutine
Abstract_destroy	classes_component_coordinates_writer	Subroutine
Abstract_destroy	classes_particle_insertion_method	Subroutine
Abstract_destroy	classes_volume_change_method	Subroutine
Abstract_destroy	classes_maximum_box_compression_explorer	Subroutine
Abstract_destroy	classes_dipolar_neighbourhoods_visitor	Subroutine
Abstract_destroy	classes_plmc_propagator	Subroutine
Abstract_destroy	classes_hetero_couples	Subroutine
Abstract_destroy	classes_des_surf_mixture	Subroutine
Abstract_destroy	classes_des_self_component	Subroutine
Abstract_destroy	classes_des_reci_structure	Subroutine
Abstract_destroy	classes_des_reci_weight	Subroutine
Abstract_destroy	classes_des_reci_visitor	Subroutine
Abstract_destroy	classes_dlc_weight	Subroutine
Abstract_destroy	classes_dlc_structures	Subroutine
Abstract_destroy	classes_dlc_visitor	Subroutine
Abstract_destroy	classes_des_real_component	Subroutine
Abstract_destroy_visitable_lists	classes_visitable_cells	Subroutine
Abstract_distance	classes_periodic_box	Function
Abstract_fill_with_particles	classes_visitable_cells	Subroutine
Abstract_get	classes_permittivity	Function
Abstract_get	classes_temperature	Function
Abstract_get	classes_beta_pressure	Function	\( \beta p = \rho + \beta p_\text{ex} \)
Abstract_get	classes_external_field	Function
Abstract_get	classes_box_size_memento	Function
Abstract_get	classes_neighbour_cells	Function
Abstract_get	classes_mixture_total_moment	Function
Abstract_get	classes_average_num_particles	Function
Abstract_get	classes_num_particles	Function
Abstract_get	classes_component_dipole_moments	Function
Abstract_get	classes_component_coordinates	Function
Abstract_get	classes_min_distance	Function
Abstract_get	classes_tower_sampler	Function
Abstract_get	classes_hetero_couples	Function
Abstract_get	classes_des_reci_structure	Function	Structure factor: \[ S(\vec{k}) = \sum_{\vec{x}, \vec{\mu}} (\vec{k}\cdot\vec{\mu}) e^{i\vec{k}\cdot\vec{x}} \]
Abstract_get	classes_des_reci_weight	Function	\[ w_\alpha(\vec{k}) = \begin{cases} 0 & \text{if } \vec{k} = \vec{0} \\ \frac{e^{-k^2/4\alpha^2}}{2\epsilon V k^2} & \text{else} \end{cases} \]
Abstract_get	classes_dlc_weight	Function	\[ w(\vec{k}_{1:2}) = \begin{cases} 0 & \text{if } \vec{k}_{1:2} = \vec{0} \\ \frac{1}{2\epsilon S} \frac{1}{k_{1:2} (e^{k_{1:2} L_3} - 1)} & \text{else} \end{cases} \]
Abstract_get_delta	classes_changed_box_size_ratio	Function
Abstract_get_density	classes_component_chemical_potential	Function	\( \rho \)
Abstract_get_frequency_ratio	classes_exchanged_boxes_size	Function
Abstract_get_frequency_ratio	classes_changed_box_size	Function
Abstract_get_gap_centers	classes_visitable_walls	Function
Abstract_get_gap_radii	classes_visitable_walls	Function
Abstract_get_global_lbounds	classes_neighbour_cells	Function
Abstract_get_global_ubounds	classes_neighbour_cells	Function
Abstract_get_integer	classes_number_to_string	Function
Abstract_get_inv_pow_activity	classes_component_chemical_potential	Function	\( a^{-N} \)
Abstract_get_max_distance	classes_pair_potential	Function
Abstract_get_max_distance	classes_dipoles_neighbourhood	Function
Abstract_get_min_distance	classes_pair_potential	Function
Abstract_get_minus	classes_dlc_structures	Function	Cf. Abstract_get_plus
Abstract_get_norm	classes_component_dipole_moments	Function
Abstract_get_num	classes_component_dipole_moments	Function
Abstract_get_num	classes_component_coordinates	Function
Abstract_get_num	classes_component_coordinates_writer	Function
Abstract_get_num	classes_hetero_couples	Function
Abstract_get_num_choices	classes_box_particle_exchange	Function
Abstract_get_num_choices	classes_box_particles_swap	Function
Abstract_get_num_choices	classes_box_particle_move	Function
Abstract_get_num_choices	classes_tower_sampler	Function
Abstract_get_numbers	classes_reciprocal_lattice	Function
Abstract_get_plus	classes_dlc_structures	Function	Structure factors \[ S_\pm(\vec{k}_{1:2}) = \sum_{\vec{x}, \vec{\mu}} (\pm k_{1:2} \mu_3 + i \vec{k}_{1:2} \cdot \vec{\mu}_{1:2}) e^{\pm k_{1:2} x_3} e^{i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} \]
Abstract_get_ratio	classes_changed_box_size	Function
Abstract_get_real_array	classes_number_to_string	Function
Abstract_get_real_scalar	classes_number_to_string	Function
Abstract_get_size	classes_periodic_box	Function
Abstract_get_times_box_edge	classes_des_convergence_parameter	Function
Abstract_get_width	classes_hard_contact	Function
Abstract_increase_delta	classes_exchanged_boxes_size	Subroutine
Abstract_increase_delta	classes_changed_box_size	Subroutine
Abstract_index	classes_neighbour_cells	Function
Abstract_is_boxed	classes_parallelepiped_domain	Function
Abstract_is_dipolar	classes_mixture_total_moment	Function
Abstract_is_dipolar	classes_des_reci_structure	Function
Abstract_is_dipolar	classes_dlc_structures	Function
Abstract_is_inside	classes_parallelepiped_domain	Function
Abstract_is_inside	classes_neighbour_cells	Function
Abstract_is_sparse_in_z	classes_reciprocal_lattice	Function	This function tells if the density of wave vectors is too sparse in \( z \) direction.
Abstract_meet	classes_dipoles_neighbourhood	Subroutine
Abstract_meet	classes_des_self_component	Function	\[ u(\mu) = \frac{\alpha^3}{6\epsilon\pi^{3/2}} \vec{\mu}\cdot\vec{\mu} \]
Abstract_meet	classes_des_real_pair	Function	\[ u(\vec{r}_{ij}, \vec{\mu}_i, \vec{\mu}_j) = \frac{1}{4\pi \epsilon} \left[ (\vec{\mu}_i \cdot \vec{\mu}_j) B_\alpha(r_{ij}) - (\vec{\mu}_i \cdot \vec{r}_{ij}) (\vec{\mu}_j \cdot \vec{r}_{ij}) C_\alpha(r_{ij}) \right] \] cf. des_real_B & des_real_C
Abstract_metropolis_algorithm	classes_box_particle_exchange	Subroutine
Abstract_metropolis_algorithm	classes_box_particles_swap	Subroutine
Abstract_metropolis_algorithm	classes_box_particle_move	Subroutine
Abstract_position_from_ceiling	classes_visitable_walls	Function
Abstract_position_from_floor	classes_visitable_walls	Function
Abstract_read	classes_complete_coordinates_reader	Subroutine
Abstract_remove	classes_visitable_list	Subroutine
Abstract_remove	classes_visitable_cells	Subroutine
Abstract_remove	classes_mixture_total_moment	Subroutine
Abstract_remove	classes_component_coordinates	Subroutine
Abstract_reset	classes_neighbour_cells	Subroutine
Abstract_reset	classes_visitable_cells	Subroutine
Abstract_reset	classes_mixture_total_moment	Subroutine
Abstract_reset	classes_tower_sampler	Subroutine	Sets the ``stories'' of the tower.
Abstract_reset	classes_plmc_propagator	Subroutine
Abstract_reset	classes_des_reci_structure	Subroutine
Abstract_reset	classes_des_reci_weight	Subroutine
Abstract_reset	classes_dlc_weight	Subroutine
Abstract_reset	classes_dlc_structures	Subroutine
Abstract_reset_selectors	classes_box_particle_exchange	Subroutine
Abstract_reset_selectors	classes_box_particles_swap	Subroutine
Abstract_reset_selectors	classes_box_particle_move	Subroutine
Abstract_resize_only	classes_neighbour_cells	Function
Abstract_restore	classes_dipolar_interactions_facade	Subroutine
Abstract_save	classes_box_size_memento	Subroutine
Abstract_save	classes_dipolar_interactions_facade	Subroutine
Abstract_set	classes_permittivity	Subroutine
Abstract_set	classes_temperature	Subroutine
Abstract_set	classes_beta_pressure	Subroutine
Abstract_set	classes_periodic_box	Subroutine
Abstract_set	classes_visitable_list	Subroutine
Abstract_set	classes_num_particles	Subroutine
Abstract_set	classes_component_chemical_potential	Subroutine
Abstract_set	classes_min_distance	Subroutine
Abstract_set	classes_changed_box_size_ratio	Subroutine
Abstract_set	classes_exchanged_boxes_size	Subroutine
Abstract_set	classes_dipoles_neighbourhood	Subroutine
Abstract_set	classes_des_convergence_parameter	Subroutine
Abstract_set_all	classes_component_coordinates	Subroutine
Abstract_set_core	classes_radial_explorer	Subroutine
Abstract_set_delta_energy	classes_volume_change_method	Subroutine
Abstract_set_min_distance	classes_maximum_box_compression_explorer	Subroutine
Abstract_set_neighbours	classes_neighbour_cells	Subroutine
Abstract_skip	classes_neighbour_cells	Function
Abstract_target	classes_box_size_memento	Subroutine
Abstract_target	classes_visitable_cells	Subroutine
Abstract_target	classes_des_reci_structure	Subroutine
Abstract_target	classes_des_reci_weight	Subroutine
Abstract_target	classes_des_reci_visitor	Subroutine
Abstract_target	classes_dlc_weight	Subroutine
Abstract_target	classes_dlc_structures	Subroutine
Abstract_target	classes_dlc_visitor	Subroutine
Abstract_target	classes_des_real_component	Subroutine
Abstract_target	classes_des_real_pair	Subroutine
Abstract_target_real	classes_dipolar_interactions_facade	Subroutine
Abstract_translate	classes_visitable_cells	Subroutine	No check: to_position & from%position are assumed to be within accessible_domain
Abstract_try	classes_box_particle_exchange	Subroutine
Abstract_try	classes_box_particles_swap	Subroutine
Abstract_try	classes_box_particle_move	Subroutine
Abstract_try	classes_particle_insertion_method	Subroutine
Abstract_try	classes_volume_change_method	Subroutine
Abstract_try	classes_maximum_box_compression_explorer	Subroutine
Abstract_try	classes_dipolar_neighbourhoods_visitor	Subroutine
Abstract_try	classes_plmc_propagator	Subroutine
Abstract_tune	classes_move_tuner	Subroutine
Abstract_update_add	classes_des_reci_structure	Subroutine	cf. Abstract_update_exchange
Abstract_update_add	classes_dlc_structures	Subroutine	cf. Abstract_update_exchange
Abstract_update_exchange	classes_des_reci_structure	Subroutine	Structure factor update when a particle of coordinates \( (\vec{x}, \vec{\mu}) \) is added (\( + )\) or removed (\( - \)). \[ \Delta S(\vec{k}) = \pm (\vec{k}\cdot\vec{\mu}) e^{i\vec{k}\cdot\vec{x}} \]
Abstract_update_exchange	classes_dlc_structures	Subroutine	Structure factors update when a particle of coordinates \( (\vec{x}, \vec{\mu}) \) is added (\( + )\) or removed (\( - \)): \[ \Delta S_\pm(\vec{k}_{1:2}) = {\bf\pm} (\pm k_{1:2} \mu_3 + i \vec{k}_{1:2} \cdot \vec{\mu}_{1:2}) e^{\pm k_{1:2} x_3} e^{i \vec{k}_{1:2} \cdot \vec{x}_{1:2}}. \]
Abstract_update_remove	classes_des_reci_structure	Subroutine	cf. Abstract_update_exchange
Abstract_update_remove	classes_dlc_structures	Subroutine	cf. Abstract_update_exchange
Abstract_update_rotation	classes_des_reci_structure	Subroutine
Abstract_update_rotation	classes_dlc_structures	Subroutine
Abstract_update_switch	classes_des_reci_structure	Subroutine	Structure factor update when 2 particles of coordinates \( (\vec{x}_1, \vec{\mu}_1) \) and \( (\vec{x}_2, \vec{\mu}_2) \) are switched. \[ \Delta S(\vec{k}) = \vec{k}\cdot(\vec{\mu}_1 - \vec{\mu}_2) \left( e^{i\vec{k}\cdot\vec{x}_2} - e^{i\vec{k}\cdot\vec{x}_1} \right) \]
Abstract_update_switch	classes_dlc_structures	Subroutine	Structure factors update when 2 particles of coordinates \( (\vec{x}_1, \vec{\mu}_1) \) and \( (\vec{x}_2, \vec{\mu}_2) \) are switched. \[ \Delta S_\pm(\vec{k}_{1:2}) = \left[ \pm k_{1:2} (\mu_{1, 3} - \mu_{2, 3}) + i \vec{k}_{1:2} \cdot (\vec{\mu}_{1, 1:2} - \vec{\mu}_{2, 1:2}) \right] \\ \left( e^{\pm k_{1:2} x_{2, 3}} e^{i \vec{k}_{1:2} \cdot \vec{x}_{2, 1:2}} - e^{\pm k_{1:2} x_{1, 3}} e^{i \vec{k}_{1:2} \cdot \vec{x}_{1, 1:2}} \right) \]
Abstract_update_translation	classes_des_reci_structure	Subroutine	Structure factor update when a particle is translated: \( (\vec{x}, \vec{\mu}) \to (\vec{x}^\prime, \vec{\mu}) \). \[ \Delta S(\vec{k}) = (\vec{k}\cdot\vec{\mu}) \left( e^{i\vec{k}\cdot\vec{x}^\prime} - e^{i\vec{k}\cdot\vec{x}} \right) \]
Abstract_update_translation	classes_dlc_structures	Subroutine	Structure factors update when a particle is translated: \( (\vec{x}, \vec{\mu}) \to (\vec{x}^\prime, \vec{\mu}) \). \[ \Delta S_\pm(\vec{k}_{1:2}) = (\pm k_{1:2} \mu_3 + i \vec{k}_{1:2} \cdot \vec{\mu}_{1:2}) \left( e^{\pm k_{1:2} x^\prime_3} e^{i \vec{k}_{1:2} \cdot \vec{x}^\prime_{1:2}} - e^{\pm k_{1:2} x_3} e^{i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} \right) \] Warning: only half wave vectors are updated.
Abstract_update_transmutation	classes_des_reci_structure	Subroutine	Structure factor update when a particle is transmuted: \( (\vec{x}, \vec{\mu}) \to (\vec{x}, \vec{\mu}^\prime) \). \[ \Delta S(\vec{k}) = \vec{k}\cdot(\vec{\mu}^\prime - \vec{\mu}) e^{i\vec{k}\cdot\vec{x}} \]
Abstract_update_transmutation	classes_dlc_structures	Subroutine	Structure factors update when a particle is transmuted: \( (\vec{x}, \vec{\mu}) \to (\vec{x}, \vec{\mu}^\prime) \). \[ \Delta S_\pm(\vec{k}_{1:2}) = \left[ \pm k_{1:2} (\mu^\prime_3 - \mu_3) + i \vec{k}_{1:2} \cdot (\vec{\mu}^\prime_{1:2} - \vec{\mu}_{1:2}) \right] e^{\pm k_{1:2} x_3} e^{i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} \] Warning: only half wave vectors are updated.
Abstract_vector	classes_periodic_box	Function
Abstract_visit	classes_walls_visitor	Subroutine
Abstract_visit	classes_visitable_walls	Subroutine
Abstract_visit	classes_des_self_component	Function	\[ \frac{\alpha^3}{6\epsilon\pi^{3/2}} \sum_{\vec{\mu}} \vec{\mu}\cdot\vec{\mu} \]
Abstract_visit	classes_des_reci_visitor	Function	\[ U = \sum_{\vec{k}} w_\alpha(\vec{k}) \|S(\vec{k})\|^2 \] where \( w_\alpha(\vec{k}) \) is Abstract_DES_Reci_Weight and \( S(\vec{k}) \) is Abstract_DES_Reci_Structure.
Abstract_visit	classes_dlc_visitor	Function	\[ U = \sum_{\vec{k}_{1:2}} w(\vec{k}_{1:2}) \Re[S_+(\vec{k}_{1:2}) S_-(\vec{k}_{1:2})^\ast] \] where \( w(\vec{k}_{1:2}) \) is Abstract_DLC_Weight and \( S_\pm(\vec{k}_{1:2}) \) is Abstract_DLC_Structures.
Abstract_visit	classes_des_real_component	Subroutine	\[ \frac{V_\text{s}}{V} \sum_{j} [\text{c}(j, i_\text{exclude})] u \left(\left( \frac{V_\text{s}}{V} \right)^{1/3} \vec{r}_{ij}, \vec{\mu}_i, \vec{\mu}_j \right) \] cf. Abstract_get and Abstract_meet
Abstract_visit_add	classes_des_surf_mixture	Function
Abstract_visit_add	classes_des_reci_visitor	Function
Abstract_visit_add	classes_dlc_visitor	Function
Abstract_visit_contacts	classes_visitable_list	Subroutine
Abstract_visit_contacts	classes_visitable_cells	Subroutine
Abstract_visit_dipolar	classes_particle_insertion_method	Subroutine
Abstract_visit_dipolar_neighbours	classes_visitable_list	Subroutine
Abstract_visit_dipolar_neighbours	classes_visitable_cells	Subroutine
Abstract_visit_energy	classes_visitable_list	Subroutine
Abstract_visit_energy	classes_visitable_cells	Subroutine
Abstract_visit_exchange	classes_des_reci_visitor	Function	Energy delta when a particle of coordinates \( (\vec{x}, \vec{\mu}) \) is added (\( + \)) or removed (\( - \)). \[ \Delta U = \sum_{\vec{k}} w_\alpha(\vec{k}) (\vec{k} \cdot \vec{\mu}) \left[ \pm 2 \Re\left( e^{i\vec{k}\cdot\vec{x}} S^\ast(\vec{k}) \right) + (\vec{k} \cdot \vec{\mu}) \right] \]
Abstract_visit_exchange	classes_dlc_visitor	Function	Energy delta when a particle of coordinates \( (\vec{x}, \vec{\mu}) \) is added (\( \pmb{+} \)) or removed (\( \pmb{-} \)). \[ \Delta S_-^\ast(\vec{k}_{1:2}) = \pmb{\pm} (-k_{1:2} \mu_3 - i \vec{k}_{1:2} \cdot \vec{\mu}_{1:2}) e^{-k_{1:2} x_3} e^{-i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} \] \[ \Delta S_+(\vec{k}_{1:2}) = \pmb{\pm} (+k_{1:2} \mu_3 + i \vec{k}_{1:2} \cdot \vec{\mu}_{1:2}) e^{+k_{1:2} x_3} e^{+i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} \] \[ \Re[\Delta S_+(\vec{k}_{1:2}) \Delta S_-^\ast(\vec{k}_{1:2})] = -(k_{1:2} \mu_3)^2 + (\vec{k}_{1:2} \cdot \vec{\mu}_{1:2})^2 \]
Abstract_visit_field	classes_particle_insertion_method	Subroutine
Abstract_visit_inter	classes_short_pairs_visitor	Subroutine
Abstract_visit_intra	classes_short_pairs_visitor	Subroutine
Abstract_visit_min_distance	classes_visitable_list	Subroutine
Abstract_visit_min_distance	classes_visitable_cells	Subroutine
Abstract_visit_remove	classes_des_surf_mixture	Function
Abstract_visit_remove	classes_des_reci_visitor	Function
Abstract_visit_remove	classes_dlc_visitor	Function
Abstract_visit_rotation	classes_des_surf_mixture	Function
Abstract_visit_rotation	classes_des_reci_visitor	Function
Abstract_visit_rotation	classes_dlc_visitor	Function
Abstract_visit_short	classes_particle_insertion_method	Subroutine
Abstract_visit_switch	classes_des_reci_visitor	Function	Energy delta when 2 particles of coordinates \( (\vec{x}_1, \vec{\mu}_1) \) and \( (\vec{x}_2, \vec{\mu}_2) \) switch their positions. \[ \Delta U = 2 \sum_{\vec{k}} w_\alpha(\vec{k}) \vec{k}\cdot(\vec{\mu}_1 - \vec{\mu}_2) \left\{ \Re\left[ \left(e^{i\vec{k}\cdot\vec{x}_2} - e^{i\vec{k}\cdot\vec{x}_1} \right) S^\ast(\vec{k}) \right] + \vec{k}\cdot(\vec{\mu}_1 - \vec{\mu}_2) \left[ 1 - \Re\left( e^{i\vec{k}\cdot\vec{x}_1} e^{-i\vec{k}\cdot\vec{x}_2} \right) \right] \right\} \]
Abstract_visit_switch	classes_dlc_visitor	Function	Energy delta when 2 particles of coordinates \( (\vec{x}_1, \vec{\mu}_1) \) and \( (\vec{x}_2, \vec{\mu}_2) \) switch their positions. \[ \Delta S_-^\ast(\vec{k}_{1:2}) = \left[ -k_{1:2} (\mu_{1, 3} - \mu_{2, 3}) - i \vec{k}_{1:2} \cdot (\vec{\mu}_{1, 1:2} - \vec{\mu}_{2, 1:2}) \right] \\ \left( e^{-k_{1:2} x_{2, 3}} e^{-i \vec{k}_{1:2} \cdot \vec{x}_{2, 1:2}} - e^{-k_{1:2} x_{1, 3}} e^{-i \vec{k}_{1:2} \cdot \vec{x}_{1, 1:2}} \right) \] \[ \Delta S_+(\vec{k}_{1:2}) = \left[ +k_{1:2} (\mu_{1, 3} - \mu_{2, 3}) + i \vec{k}_{1:2} \cdot (\vec{\mu}_{1, 1:2} - \vec{\mu}_{2, 1:2}) \right] \\ \left( e^{+k_{1:2} x_{2, 3}} e^{+i \vec{k}_{1:2} \cdot \vec{x}_{2, 1:2}} - e^{+k_{1:2} x_{1, 3}} e^{+i \vec{k}_{1:2} \cdot \vec{x}_{1, 1:2}} \right) \] \[ \Delta S_+(\vec{k}_{1:2}) \Delta S_-^\ast(\vec{k}_{1:2}) = \left\{ -[k_{1:2} (\mu_{1, 3} - \mu_{2, 3})]^2 + [\vec{k}_{1:2} \cdot (\vec{\mu}_{1, 1:2} - \vec{\mu}_{2, 1:2})]^2 - \\ 2 i k_{1:2} (\mu_{1, 3} - \mu_{2, 3}) \vec{k}_{1:2} \cdot (\vec{\mu}_{1, 1:2} - \vec{\mu}_{2, 1:2}) \right\} \left( 2 - \\ e^{+k_{1:2} x_{2, 3}} e^{+i \vec{k}_{1:2} \cdot \vec{x}_{2, 1:2}} e^{-k_{1:2} x_{1, 3}} e^{-i \vec{k}_{1:2} \cdot \vec{x}_{1, 1:2}} - \\ e^{+k_{1:2} x_{1, 3}} e^{+i \vec{k}_{1:2} \cdot \vec{x}_{1, 1:2}} e^{-k_{1:2} x_{2, 3}} e^{-i \vec{k}_{1:2} \cdot \vec{x}_{2, 1:2}} \right) \]
Abstract_visit_translation	classes_des_reci_visitor	Function	Energy delta when a particle is translated: \( (\vec{x}, \vec{\mu}) \to (\vec{x}^\prime, \vec{\mu}) \). \[ \Delta U = 2 \sum_{\vec{k}} w_\alpha(\vec{k}) (\vec{k}\cdot\vec{\mu}) \left\{ \Re\left[ \left( e^{i\vec{k}\cdot\vec{x}^\prime} - e^{i\vec{k}\cdot\vec{x}} \right) S^\ast(\vec{k}) \right] + (\vec{k}\cdot\vec{\mu})\left[ 1 - \Re\left( e^{i\vec{k}\cdot\vec{x}^\prime} e^{-i\vec{k}\cdot\vec{x}} \right) \right] \right\} \]
Abstract_visit_translation	classes_dlc_visitor	Function	Energy delta when a particle is translated: \( (\vec{x}, \vec{\mu}) \to (\vec{x}^\prime, \vec{\mu}) \). \[ \Delta S_-^\ast(\vec{k}_{1:2}) = (-k_{1:2} \mu_3 - i \vec{k}_{1:2} \cdot \vec{\mu}_{1:2}) \left( e^{-k_{1:2} x^\prime_3} e^{-i \vec{k}_{1:2} \cdot \vec{x}^\prime_{1:2}} - e^{-k_{1:2} x_3} e^{-i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} \right) \] \[ \Delta S_+(\vec{k}_{1:2}) = (+k_{1:2} \mu_3 + i \vec{k}_{1:2} \cdot \vec{\mu}_{1:2}) \left( e^{+k_{1:2} x^\prime_3} e^{+i \vec{k}_{1:2} \cdot \vec{x}^\prime_{1:2}} - e^{+k_{1:2} x_3} e^{+i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} \right) \] \[ \Delta S_+(\vec{k}_{1:2}) \Delta S_-^\ast(\vec{k}_{1:2}) = \left[ -(k_{1:2} \mu_3)^2 + (\vec{k}_{1:2} \cdot \vec{\mu}_{1:2})^2 - 2 i k_{1:2} \mu_3 \vec{k}_{1:2} \cdot \vec{\mu}_{1:2} \right] \left( 2 - \\ e^{+k_{1:2} x^\prime_3} e^{+i \vec{k}_{1:2} \cdot \vec{x}^\prime_{1:2}} e^{-k_{1:2} x_3} e^{-i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} - \\ e^{-k_{1:2} x^\prime_3} e^{-i \vec{k}_{1:2} \cdot \vec{x}^\prime_{1:2}} e^{+k_{1:2} x_3} e^{+i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} \right) \]
Abstract_visit_transmutation	classes_des_reci_visitor	Function	Energy delta when a particle is transmuted: \( (\vec{x}, \vec{\mu}) \to (\vec{x}, \vec{\mu}^\prime) \). \[ \Delta U = \sum_{\vec{k}} w_\alpha(\vec{k}) \vec{k}\cdot(\vec{\mu}^\prime - \vec{\mu}) \left[ 2\Re\left( e^{i\vec{k}\cdot\vec{x}} S^\ast(\vec{k}) \right) + \vec{k}\cdot(\vec{\mu}^\prime - \vec{\mu}) \right] \]
Abstract_visit_transmutation	classes_dlc_visitor	Function	Energy delta when a particle is transmuted: \( (\vec{x}, \vec{\mu}) \to (\vec{x}, \vec{\mu}^\prime) \). \[ \Delta S_-^\ast(\vec{k}_{1:2}) = \left[ -k_{1:2} (\mu^\prime_3 - \mu_3) - i \vec{k}_{1:2} \cdot (\vec{\mu}^\prime_{1:2} - \vec{\mu}_{1:2}) \right] e^{-k_{1:2} x_3} e^{-i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} \] \[ \Delta S_+(\vec{k}_{1:2}) = \left[ +k_{1:2} (\mu^\prime_3 - \mu_3) + i \vec{k}_{1:2} \cdot (\vec{\mu}^\prime_{1:2} - \vec{\mu}_{1:2}) \right] e^{+k_{1:2} x_3} e^{+i \vec{k}_{1:2} \cdot \vec{x}_{1:2}} \] \[ \Re[\Delta S_+(\vec{k}_{1:2}) \Delta S_-^\ast(\vec{k}_{1:2})] = -[k_{1:2} (\mu^\prime_3 - \mu_3)]^2 + [\vec{k}_{1:2} \cdot (\vec{\mu}^\prime_{1:2} - \vec{\mu}_{1:2})]^2 \]
Abstract_visit_walls	classes_particle_insertion_method	Subroutine
Abstract_write	classes_radial_explorer	Subroutine
Abstract_write	classes_rectangle_writer	Subroutine
Abstract_write	classes_triangle_writer	Subroutine
Abstract_write	classes_changes_success_writer	Subroutine
Abstract_write	classes_complete_coordinates_writer	Subroutine
Abstract_write	classes_component_coordinates_writer	Subroutine
Abstract_write_array	classes_real_writer	Subroutine	This subroutine differs from Abstract_write_reals: there is no local selection (filter).
Abstract_write_integers	classes_line_writer	Subroutine
Abstract_write_reals	classes_line_writer	Subroutine
Abstract_write_scalar	classes_real_writer	Subroutine
Add_acceptation_probability	classes_box_particle_exchange	Function	\[ P[N \to N+1] = \min \left( 1, \frac{V \rho}{N+1} e^{-\beta \Delta U_{N \to N+1}} a^{N} \right) \]
Add_define_exchange	classes_box_particle_exchange	Subroutine
add_double	procedures_observables_energies_factory	Subroutine
add_energies	procedures_observables_energies_factory	Subroutine
Add_increment_hit	classes_box_particle_exchange	Subroutine
Add_increment_success	classes_box_particle_exchange	Subroutine
add_single	procedures_observables_energies_factory	Subroutine
add_to_report	procedures_generating_algorithms_factory	Subroutine
add_to_report	procedures_random_seed_factory	Subroutine
Add_update_component	classes_box_particle_exchange	Subroutine
Add_visit_dipolar	classes_box_particle_exchange	Subroutine
Add_visit_field	classes_box_particle_exchange	Subroutine
Add_visit_short	classes_box_particle_exchange	Subroutine
Add_visit_walls	classes_box_particle_exchange	Subroutine
allocate	procedures_visitable_list_factory	Subroutine
allocate	procedures_pair_potential_factory	Subroutine
allocate	procedures_potential_expression_factory	Subroutine
allocate	procedures_density_explorer_factory	Subroutine
allocate	procedures_changed_boxes_size_ratio_factory	Subroutine
allocate	procedures_des_real_pair_factory	Subroutine
allocate_coordinates	procedures_complete_coordinates_reader	Subroutine
allocate_element	procedures_component_coordinates_reader_factory	Subroutine
allocate_field_expression	procedures_field_expression_factory	Subroutine
allocate_floor_penetration	procedures_floor_penetration_factory	Subroutine
allocate_triangle	procedures_neighbour_cells_factory	Subroutine
allocate_xy	procedures_exchanged_boxes_size_factory	Subroutine
allocate_xyz	procedures_exchanged_boxes_size_factory	Subroutine
apply_external_field	procedures_environment_inquirers	Interface
apply_external_field_from	procedures_environment_inquirers	Function
apply_external_field_from_json	procedures_environment_inquirers	Function
Array_add	classes_visitable_list	Subroutine
Array_construct	classes_visitable_list	Subroutine
Array_destroy	classes_visitable_list	Subroutine
Array_remove	classes_visitable_list	Subroutine
Array_set	classes_visitable_list	Subroutine
Array_visit_contacts	classes_visitable_list	Subroutine
Array_visit_dipolar_neighbours	classes_visitable_list	Subroutine
Array_visit_energy	classes_visitable_list	Subroutine
Array_visit_min_distance	classes_visitable_list	Subroutine
Arrays_restore	classes_visitable_cells_memento	Subroutine
Arrays_save	classes_visitable_cells_memento	Subroutine
average	procedures_elementary_statistics	Function	\[ \langle x \rangle = \frac{1}{N} \sum_{i = 1}^N x_i \]
Block_get_height	classes_floor_penetration	Function
Block_meet	classes_floor_penetration	Subroutine
Block_set	classes_floor_penetration	Subroutine
box_size_can_change	procedures_environment_inquirers	Interface
box_size_can_change_from_changed	procedures_environment_inquirers	Function
box_size_change_reset_cells	procedures_short_interactions_resetter	Subroutine
Boxed_construct	classes_parallelepiped_domain	Subroutine
Boxed_destroy	classes_parallelepiped_domain	Subroutine
Boxed_get_origin	classes_parallelepiped_domain	Function
Boxed_get_size	classes_parallelepiped_domain	Function
calculate_ratio	module_changes_success	Function
change_counter_reset	module_changes_success	Subroutine
change_counters_reset	module_changes_success	Subroutine
change_success_set	module_changes_success	Subroutine
change_successes_set	module_changes_success	Subroutine
changes_counter_reset	module_changes_success	Subroutine
changes_success_set	module_changes_success	Subroutine
check	procedures_environment_factory	Subroutine
check_array_size	procedures_checks	Interface
check_consistency	procedures_dipolar_interactions_factory	Subroutine
check_data_found	procedures_checks	Subroutine
check_file_exists	procedures_checks	Subroutine
check_in_range	procedures_checks	Subroutine
check_increase_factor	procedures_checks	Subroutine
check_integer_array_size	procedures_checks	Subroutine
check_norm	procedures_checks	Subroutine
check_periodicity_xy	procedures_density_explorer_factory	Subroutine
check_positive	procedures_checks	Interface
check_positive_integer_array	procedures_checks	Subroutine
check_positive_integer_scalar	procedures_checks	Subroutine
check_positive_real_array	procedures_checks	Subroutine
check_positive_real_scalar	procedures_checks	Subroutine
check_potential_domain	procedures_checks	Subroutine
check_ratio	procedures_checks	Subroutine
check_real_array_size	procedures_checks	Subroutine
check_string_not_empty	procedures_checks	Subroutine
Chemical_Potential_construct	classes_average_num_particles	Subroutine
Chemical_Potential_destroy	classes_average_num_particles	Subroutine
Chemical_Potential_set	classes_average_num_particles	Subroutine
clone_real	classes_dipolar_interactions_facade	Subroutine
component_can_exchange	procedures_mixture_inquirers	Interface
component_can_exchange_from_chemical_potential	procedures_mixture_inquirers	Function
component_can_rotate	procedures_mixture_inquirers	Function
component_can_translate	procedures_mixture_inquirers	Function
component_exists	procedures_mixture_inquirers	Interface
component_exists_from_num	procedures_mixture_inquirers	Function
component_has_orientations	procedures_mixture_inquirers	Function
component_has_positions	procedures_mixture_inquirers	Function
component_interacts_with_wall	procedures_short_interactions_inquirers	Function
component_is_dipolar	procedures_mixture_inquirers	Interface
component_is_dipolar_from_dipole_moments	procedures_mixture_inquirers	Function
component_is_dipolar_from_json	procedures_mixture_inquirers	Function
components_interact	procedures_short_interactions_inquirers	Interface
components_interact_from_min_distance	procedures_short_interactions_inquirers	Function
components_interact_from_pair_potential	procedures_short_interactions_inquirers	Function
Concrete_acceptation_probability	classes_boxes_volume_exchange	Function	\[ P[(V_{\boldsymbol{I}}, V_{\boldsymbol{J}}) \to (V_{\boldsymbol{I}}^\prime, V_{\boldsymbol{J}}^\prime)] = \min \left[ 1, \left( \frac{V_{\boldsymbol{I}}^\prime} {V_{\boldsymbol{I}}} \right)^{N_{\boldsymbol{I}} + 1} \left( \frac{V_{\boldsymbol{J}}^\prime} {V_{\boldsymbol{J}}} \right)^{N_{\boldsymbol{J}} + 1} e^{-\beta \Delta U_{(V_{\boldsymbol{I}}, V_{\boldsymbol{J}}) \to (V_{\boldsymbol{I}}^\prime, V_{\boldsymbol{J}}^\prime)}} \right] \]
Concrete_acceptation_probability	classes_boxes_particle_teleportation	Function	\[ P \left[ i_I^{\boldsymbol{I}} \to N_I^{\boldsymbol{J}} + 1 \right] = \min \left(1, \frac{N_I^{\boldsymbol{I}}}{N_I^{\boldsymbol{J}} + 1} \frac{V^{\boldsymbol{J}}}{V^{\boldsymbol{I}}} e^{-\beta \Delta U_{i_I^{\boldsymbol{I}} \to N_I^{\boldsymbol{J}} + 1}} \right) \]
Concrete_acceptation_probability	classes_box_volume_change	Function	\[ P[V \to V^\prime] = \min \left( 1, e^{-\beta p V \left( \frac{V^\prime}{V} - 1 \right)} \left( \frac{V^\prime}{V} \right)^{N+1} e^{-\beta [U(\vec{s}^N, V^\prime) - U(\vec{s}^N, V)]} \right) \]
Concrete_acceptation_probability	classes_boxes_particles_swap	Function	\[ P[i_I^{\boldsymbol{I}} \to N_I^{\boldsymbol{J}} + 1, i_J^{\boldsymbol{J}} \to N_J^{\boldsymbol{I}} + 1] = \min \left(1, \frac{N_I^{\boldsymbol{I}}}{N_I^{\boldsymbol{J}} + 1} \frac{N_J^{\boldsymbol{J}}}{N_J^{\boldsymbol{I}} + 1} e^{-\beta \Delta U_{i_I^{\boldsymbol{I}} \to N_I^{\boldsymbol{J}} + 1, i_J^{\boldsymbol{J}} \to N_J^{\boldsymbol{I}} + 1}} \right) \]
Concrete_construct	classes_boxes_volume_exchange	Subroutine
Concrete_construct	classes_boxes_particle_teleportation	Subroutine
Concrete_construct	classes_box_volume_change	Subroutine
Concrete_construct	classes_boxes_particles_swap	Subroutine
Concrete_construct	classes_random_orientation	Subroutine
Concrete_construct	classes_random_position	Subroutine
Concrete_construct	classes_translated_positions	Subroutine
Concrete_construct	classes_rotated_orientations	Subroutine
Concrete_decrease_delta	classes_translated_positions	Subroutine
Concrete_decrease_delta	classes_rotated_orientations	Subroutine
Concrete_define_swap	classes_boxes_particles_swap	Subroutine
Concrete_define_teleportation	classes_boxes_particle_teleportation	Subroutine
Concrete_destroy	classes_boxes_volume_exchange	Subroutine
Concrete_destroy	classes_boxes_particle_teleportation	Subroutine
Concrete_destroy	classes_box_volume_change	Subroutine
Concrete_destroy	classes_boxes_particles_swap	Subroutine
Concrete_destroy	classes_random_orientation	Subroutine
Concrete_destroy	classes_random_position	Subroutine
Concrete_destroy	classes_translated_positions	Subroutine
Concrete_destroy	classes_rotated_orientations	Subroutine
Concrete_get	classes_random_orientation	Function	From SMAC, Algorithm 1.23, p. 43
Concrete_get	classes_random_position	Function
Concrete_get	classes_translated_positions	Function
Concrete_get	classes_rotated_orientations	Function
Concrete_get_num_choices	classes_boxes_volume_exchange	Function
Concrete_get_num_choices	classes_boxes_particle_teleportation	Function
Concrete_get_num_choices	classes_box_volume_change	Function
Concrete_get_num_choices	classes_boxes_particles_swap	Function
Concrete_increase_delta	classes_translated_positions	Subroutine
Concrete_increase_delta	classes_rotated_orientations	Subroutine
Concrete_metropolis_algorithm	classes_boxes_volume_exchange	Subroutine
Concrete_metropolis_algorithm	classes_boxes_particle_teleportation	Subroutine
Concrete_metropolis_algorithm	classes_box_volume_change	Subroutine
Concrete_metropolis_algorithm	classes_boxes_particles_swap	Subroutine
Concrete_reset_selectors	classes_boxes_volume_exchange	Subroutine
Concrete_reset_selectors	classes_boxes_particle_teleportation	Subroutine
Concrete_reset_selectors	classes_box_volume_change	Subroutine
Concrete_reset_selectors	classes_boxes_particles_swap	Subroutine
Concrete_try	classes_boxes_volume_exchange	Subroutine
Concrete_try	classes_boxes_particle_teleportation	Subroutine
Concrete_try	classes_box_volume_change	Subroutine
Concrete_try	classes_boxes_particles_swap	Subroutine
Concrete_update_components	classes_boxes_particle_teleportation	Subroutine
Concrete_update_components	classes_boxes_particles_swap	Subroutine
Concrete_visit_dipolar	classes_boxes_particle_teleportation	Subroutine
Concrete_visit_dipolar	classes_boxes_particles_swap	Subroutine
Concrete_visit_fields	classes_boxes_particle_teleportation	Subroutine
Concrete_visit_fields	classes_boxes_particles_swap	Subroutine
Concrete_visit_short	classes_boxes_particle_teleportation	Subroutine
Concrete_visit_short	classes_boxes_particles_swap	Subroutine
Concrete_visit_walls	classes_boxes_particle_teleportation	Subroutine
Concrete_visit_walls	classes_boxes_particles_swap	Subroutine
Constant_construct	classes_average_num_particles	Subroutine
Constant_destroy	classes_average_num_particles	Subroutine
Constant_get	classes_field_expression	Function
Constant_set	classes_field_expression	Subroutine
Constant_set	classes_average_num_particles	Subroutine
construct	procedures_pair_potential_factory	Subroutine
construct	procedures_density_explorer_factory	Subroutine
construct	procedures_changed_boxes_size_ratio_factory	Subroutine
construct	procedures_des_real_pair_factory	Subroutine
construct_element	procedures_component_coordinates_reader_factory	Subroutine
Coordinates_construct	classes_component_coordinates_reader	Subroutine
Coordinates_destroy	classes_component_coordinates_reader	Subroutine
Coordinates_read	classes_component_coordinates_reader	Subroutine
create	procedures_component_coordinates_reader_factory	Interface
create	procedures_json_data_factory	Subroutine
create	procedures_complete_coordinates_reader_factory	Subroutine
create	procedures_readers_factory	Subroutine
create	procedures_permittivity_factory	Subroutine
create	procedures_beta_pressures_excess_factory	Subroutine
create	procedures_environment_factory	Subroutine
create	procedures_beta_pressure_factory	Subroutine
create	procedures_temperature_factory	Subroutine
create	procedures_external_fields_factory	Subroutine
create	procedures_field_expression_factory	Subroutine
create	procedures_reciprocal_lattices_factory	Subroutine
create	procedures_periodic_boxes_factory	Subroutine
create	procedures_box_size_memento_factory	Subroutine
create	procedures_boxes_size_checker_factory	Subroutine
create	procedures_walls_visitors_factory	Subroutine
create	procedures_visitable_walls_factory	Subroutine
create	procedures_floor_penetration_factory	Subroutine
create	procedures_hard_contact_factory	Subroutine
create	procedures_short_interactions_factory	Subroutine
create	procedures_dirac_distribution_plus_factory	Subroutine
create	procedures_visitable_cells_factory	Subroutine
create	procedures_visitable_cells_memento_factory	Subroutine
create	procedures_pair_potential_factory	Subroutine
create	procedures_potential_expression_factory	Subroutine
create	procedures_short_pairs_visitors_factory	Subroutine
create	procedures_mixture_total_moments_factory	Subroutine
create	procedures_component_factory	Subroutine
create	procedures_average_nums_particles_factory	Subroutine
create	procedures_component_chemical_potential_factory	Subroutine
create	procedures_component_dipole_moments_factory	Subroutine
create	procedures_generating_algorithms_factory	Subroutine
create	procedures_boxes_volume_exchange_factory	Subroutine
create	procedures_box_volume_change_factory	Subroutine
create	procedures_boxes_particles_swap_factory	Subroutine
create	procedures_boxes_particle_teleportation_factory	Subroutine
create	procedures_density_explorer_factory	Subroutine
create	procedures_radial_explorer_factory	Subroutine
create	procedures_exploring_observables_factory	Subroutine
create	procedures_observables_changes_factory	Interface
create	procedures_observables_energies_factory	Interface
create	procedures_generating_observables_factory	Subroutine
create	procedures_tower_sampler_factory	Interface
create	procedures_random_coordinates_factory	Interface
create	procedures_changed_boxes_size_ratio_factory	Interface
create	procedures_maximum_box_compression_factory	Subroutine
create	procedures_changes_component_factory	Subroutine
create	procedures_changes_factory	Interface
create	procedures_exchanged_boxes_size_factory	Subroutine
create	procedures_changed_boxes_size_factory	Subroutine	If total volume can change, each box can change its size independently in GEMC cf. Panagiotopoulos Mol. Phys. 1988.
create	procedures_moved_coordinates_factory	Interface
create	procedures_changes_success_writer_factory	Interface
create	procedures_exploring_writers_factory	Subroutine
create	procedures_real_writer_factory	Interface
create	procedures_directed_graph_writer_factory	Subroutine
create	procedures_line_writer_factory	Interface
create	procedures_energies_writers_factory	Interface
create	procedures_generating_writers_factory	Subroutine
create	procedures_rectangle_writer_factory	Interface
create	procedures_triangle_writer_factory	Interface
create	procedures_json_reports_factory	Interface
create	procedures_component_coordinates_writer_factory	Interface
create	procedures_complete_coordinates_writer_factory	Subroutine
create	procedures_particle_insertion_method_factory	Subroutine
create	procedures_volume_change_method_factory	Subroutine
create	procedures_maximum_boxes_compression_explorer_factory	Subroutine
create	procedures_dipolar_neighbourhoods_visitors_factory	Subroutine
create	procedures_logical_factory	Interface
create	procedures_reals_factory	Interface
create	procedures_markov_chain_explorer_factory	Subroutine
create	procedures_plmc_propagator_factory	Subroutine
create	procedures_markov_chain_generator_factory	Subroutine
create	procedures_des_surf_mixture_factory	Subroutine
create	procedures_dipolar_interactions_facades_factory	Subroutine
create	procedures_dipolar_neighbourhoods_factory	Subroutine
create	procedures_dipolar_interactions_factory	Subroutine
create	procedures_des_convergence_parameter_factory	Subroutine
create	procedures_des_reci_structure_factory	Subroutine
create	procedures_des_reci_visitor_factory	Subroutine
create	procedures_des_reci_weight_factory	Subroutine
create	procedures_dlc_weight_factory	Subroutine
create	procedures_dlc_visitor_factory	Subroutine
create	procedures_dlc_structures_factory	Subroutine
create	procedures_des_real_component_factory	Subroutine
create	procedures_des_real_pair_factory	Subroutine
create_accessible_domains_size	procedures_real_writer_factory	Subroutine
create_add	procedures_box_particle_exchange_factory	Subroutine
create_all	procedures_changes_factory	Subroutine
create_boxes_size	procedures_move_tuner_factory	Interface
create_boxes_size_change	procedures_move_tuner_factory	Subroutine
create_boxes_size_exchange	procedures_move_tuner_factory	Subroutine
create_change_counters	procedures_observables_changes_factory	Subroutine
create_changes_counters	procedures_observables_changes_factory	Subroutine
create_changes_successes	procedures_observables_changes_factory	Subroutine
create_components	procedures_changes_factory	Subroutine
create_coordinates_from_file	procedures_coordinates_reader	Subroutine
create_dipolar_energies	procedures_triangle_writer_factory	Subroutine
create_element	procedures_component_coordinates_reader_factory	Subroutine
create_element	procedures_neighbour_cells_factory	Subroutine
create_element	procedures_num_particles_factory	Subroutine	num_particles will be set with coordinates, cf. Abstract_Component_Coordinates_Reader.
create_element	procedures_observables_changes_factory	Subroutine
create_element	procedures_observables_energies_factory	Subroutine
create_element	procedures_tower_sampler_factory	Subroutine
create_element	procedures_changed_boxes_size_ratio_factory	Subroutine
create_element	procedures_changes_success_writer_factory	Subroutine
create_element	procedures_real_writer_factory	Subroutine
create_element	procedures_energies_writers_factory	Subroutine
create_element	procedures_component_coordinates_writer_factory	Subroutine
create_exploring	procedures_json_reports_factory	Subroutine
create_exploring	procedures_physical_model_factory	Subroutine
create_field_energies	procedures_line_writer_factory	Subroutine
create_filename_from_argument	procedures_command_arguments	Subroutine
create_from_boxes	procedures_parallelepiped_domains_factory	Subroutine
create_from_json	procedures_parallelepiped_domains_factory	Subroutine
create_from_json	procedures_min_distance_factory	Subroutine
create_from_value	procedures_min_distance_factory	Subroutine
create_from_walls	procedures_parallelepiped_domains_factory	Subroutine
create_full	procedures_hetero_couples_factory	Interface
create_full_element	procedures_hetero_couples_factory	Subroutine
create_full_line	procedures_hetero_couples_factory	Subroutine
create_generating	procedures_json_reports_factory	Subroutine
create_generating	procedures_physical_model_factory	Subroutine
create_half	procedures_hetero_couples_factory	Interface
create_half_element	procedures_hetero_couples_factory	Subroutine
create_half_line	procedures_hetero_couples_factory	Subroutine
create_line	procedures_num_particles_factory	Subroutine
create_line	procedures_observables_changes_factory	Subroutine
create_line	procedures_observables_energies_factory	Subroutine
create_line	procedures_tower_sampler_factory	Subroutine
create_line	procedures_changed_boxes_size_ratio_factory	Subroutine
create_line	procedures_real_writer_factory	Subroutine
create_line	procedures_line_writer_factory	Subroutine
create_line	procedures_energies_writers_factory	Subroutine
create_orientation	procedures_coordinates_copier_factory	Subroutine
create_orientations	procedures_component_coordinates_factory	Subroutine
create_position	procedures_coordinates_copier_factory	Subroutine
create_positions	procedures_component_coordinates_factory	Subroutine
create_positions_from_file	procedures_coordinates_reader	Subroutine
create_random_orientation	procedures_random_coordinates_factory	Subroutine
create_random_positions	procedures_random_coordinates_factory	Subroutine
create_rectangle	procedures_component_coordinates_reader_factory	Subroutine
create_rectangle	procedures_changes_success_writer_factory	Subroutine
create_rectangle	procedures_component_coordinates_writer_factory	Subroutine
create_rectangle_counters	procedures_observables_changes_factory	Subroutine
create_remove	procedures_box_particle_exchange_factory	Subroutine
create_rotated_orientations	procedures_moved_coordinates_factory	Subroutine
create_rotation	procedures_box_particle_move_factory	Subroutine
create_rotation	procedures_move_tuner_factory	Subroutine
create_short_energies	procedures_triangle_writer_factory	Subroutine
create_square_counters	procedures_observables_changes_factory	Subroutine
create_swaps_counters	procedures_observables_changes_factory	Subroutine
create_swaps_successes	procedures_rectangle_writer_factory	Subroutine
create_switch	procedures_box_particles_swap_factory	Subroutine
create_switches_successes	procedures_triangle_writer_factory	Subroutine
create_teleportations_counters	procedures_observables_changes_factory	Subroutine
create_teleportations_successes	procedures_line_writer_factory	Subroutine
create_translated_positions	procedures_moved_coordinates_factory	Subroutine
create_translation	procedures_box_particle_move_factory	Subroutine
create_translation	procedures_move_tuner_factory	Subroutine
create_transmutation	procedures_box_particles_swap_factory	Subroutine
create_transmutations_successes	procedures_rectangle_writer_factory	Subroutine
create_triangle	procedures_neighbour_cells_factory	Subroutine
create_triangle	procedures_logical_factory	Subroutine
create_triangle	procedures_reals_factory	Subroutine
create_triangle_counters	procedures_observables_changes_factory	Subroutine
create_volumes_change_success	procedures_line_writer_factory	Subroutine
create_volumes_exchange_success	procedures_triangle_writer_factory	Subroutine
create_walls_energies	procedures_line_writer_factory	Subroutine
deallocate	procedures_complete_coordinates_reader	Subroutine
deallocate	procedures_visitable_list_factory	Subroutine
deallocate_list	module_list_node	Subroutine
des_real_B	procedures_dipolar_interactions_micro	Function	\[ B_\alpha(r) = \frac{\mathrm{erfc}(\alpha r)}{r^3} + \frac{2\alpha}{\sqrt{\pi}}\frac{e^{-\alpha^2 r^2}}{r^2} \]
des_real_C	procedures_dipolar_interactions_micro	Function	\[ C_\alpha(r) = 3\frac{\mathrm{erfc}(\alpha r)}{r^5} + \frac{2\alpha}{\sqrt{\pi}}\left(2\alpha^2 + \frac{3}{r^2}\right) \frac{e^{-\alpha^2 r^2}}{r^2} \]
destroy	procedures_component_coordinates_reader_factory	Interface
destroy	procedures_json_data_factory	Subroutine
destroy	procedures_complete_coordinates_reader_factory	Subroutine
destroy	procedures_readers_factory	Subroutine
destroy	procedures_permittivity_factory	Subroutine
destroy	procedures_beta_pressures_excess_factory	Subroutine
destroy	procedures_environment_factory	Subroutine
destroy	procedures_beta_pressure_factory	Subroutine
destroy	procedures_temperature_factory	Subroutine
destroy	procedures_external_fields_factory	Subroutine
destroy	procedures_field_expression_factory	Subroutine
destroy	procedures_reciprocal_lattices_factory	Subroutine
destroy	procedures_periodic_boxes_factory	Subroutine
destroy	procedures_box_size_memento_factory	Subroutine
destroy	procedures_boxes_size_checker_factory	Subroutine
destroy	procedures_walls_visitors_factory	Subroutine
destroy	procedures_visitable_walls_factory	Subroutine
destroy	procedures_floor_penetration_factory	Subroutine
destroy	procedures_hard_contact_factory	Subroutine
destroy	procedures_short_interactions_factory	Subroutine
destroy	procedures_dirac_distribution_plus_factory	Subroutine
destroy	procedures_visitable_cells_factory	Subroutine
destroy	procedures_visitable_cells_memento_factory	Subroutine
destroy	procedures_pair_potential_factory	Subroutine
destroy	procedures_potential_expression_factory	Subroutine
destroy	procedures_short_pairs_visitors_factory	Subroutine
destroy	procedures_mixture_total_moments_factory	Subroutine
destroy	procedures_component_factory	Subroutine
destroy	procedures_average_nums_particles_factory	Subroutine
destroy	procedures_component_chemical_potential_factory	Subroutine
destroy	procedures_component_coordinates_factory	Subroutine
destroy	procedures_component_dipole_moments_factory	Subroutine
destroy	procedures_min_distance_factory	Subroutine
destroy	procedures_generating_algorithms_factory	Subroutine
destroy	procedures_density_explorer_factory	Subroutine
destroy	procedures_radial_explorer_factory	Subroutine
destroy	procedures_exploring_observables_factory	Subroutine
destroy	procedures_observables_changes_factory	Interface
destroy	procedures_observables_energies_factory	Interface
destroy	procedures_generating_observables_factory	Subroutine
destroy	procedures_tower_sampler_factory	Interface
destroy	procedures_random_coordinates_factory	Interface
destroy	procedures_coordinates_copier_factory	Interface
destroy	procedures_changed_boxes_size_ratio_factory	Interface
destroy	procedures_maximum_box_compression_factory	Subroutine
destroy	procedures_changes_component_factory	Subroutine
destroy	procedures_changes_factory	Interface
destroy	procedures_exchanged_boxes_size_factory	Subroutine
destroy	procedures_changed_boxes_size_factory	Subroutine
destroy	procedures_moved_coordinates_factory	Subroutine
destroy	procedures_move_tuner_factory	Interface
destroy	procedures_changes_success_writer_factory	Interface
destroy	procedures_exploring_writers_factory	Subroutine
destroy	procedures_real_writer_factory	Interface
destroy	procedures_directed_graph_writer_factory	Subroutine
destroy	procedures_line_writer_factory	Interface
destroy	procedures_energies_writers_factory	Interface
destroy	procedures_generating_writers_factory	Subroutine
destroy	procedures_rectangle_writer_factory	Interface
destroy	procedures_triangle_writer_factory	Interface
destroy	procedures_json_reports_factory	Interface
destroy	procedures_component_coordinates_writer_factory	Interface
destroy	procedures_complete_coordinates_writer_factory	Subroutine
destroy	procedures_particle_insertion_method_factory	Subroutine
destroy	procedures_volume_change_method_factory	Subroutine
destroy	procedures_maximum_boxes_compression_explorer_factory	Subroutine
destroy	procedures_dipolar_neighbourhoods_visitors_factory	Subroutine
destroy	procedures_logical_factory	Interface
destroy	procedures_physical_model_factory	Subroutine
destroy	procedures_reals_factory	Interface
destroy	procedures_string_factory	Interface
destroy	procedures_markov_chain_explorer_factory	Subroutine
destroy	procedures_plmc_propagator_factory	Subroutine
destroy	procedures_hetero_couples_factory	Interface
destroy	procedures_markov_chain_generator_factory	Subroutine
destroy	procedures_des_surf_mixture_factory	Subroutine
destroy	procedures_dipolar_interactions_facades_factory	Subroutine
destroy	procedures_dipolar_neighbourhoods_factory	Subroutine
destroy	procedures_dipolar_interactions_factory	Interface
destroy	procedures_des_convergence_parameter_factory	Subroutine
destroy	procedures_des_reci_structure_factory	Subroutine
destroy	procedures_des_reci_visitor_factory	Subroutine
destroy	procedures_des_reci_weight_factory	Subroutine
destroy	procedures_dlc_weight_factory	Subroutine
destroy	procedures_dlc_visitor_factory	Subroutine
destroy	procedures_dlc_structures_factory	Subroutine
destroy	procedures_des_real_component_factory	Subroutine
destroy	procedures_des_real_pair_factory	Subroutine
destroy_all	procedures_changes_factory	Subroutine
destroy_all	procedures_dipolar_interactions_factory	Subroutine
destroy_change_counters	procedures_observables_changes_factory	Subroutine
destroy_changes_counters	procedures_observables_changes_factory	Subroutine
destroy_changes_successes	procedures_observables_changes_factory	Subroutine
destroy_components	procedures_changes_factory	Subroutine
destroy_element	procedures_component_coordinates_reader_factory	Subroutine
destroy_element	procedures_parallelepiped_domains_factory	Subroutine
destroy_element	procedures_neighbour_cells_factory	Subroutine
destroy_element	procedures_num_particles_factory	Subroutine
destroy_element	procedures_observables_changes_factory	Subroutine
destroy_element	procedures_observables_energies_factory	Subroutine
destroy_element	procedures_tower_sampler_factory	Subroutine
destroy_element	procedures_random_coordinates_factory	Subroutine
destroy_element	procedures_coordinates_copier_factory	Subroutine
destroy_element	procedures_changed_boxes_size_ratio_factory	Subroutine
destroy_element	procedures_move_tuner_factory	Subroutine
destroy_element	procedures_changes_success_writer_factory	Subroutine
destroy_element	procedures_real_writer_factory	Subroutine
destroy_element	procedures_line_writer_factory	Subroutine
destroy_element	procedures_energies_writers_factory	Subroutine
destroy_element	procedures_triangle_writer_factory	Subroutine
destroy_element	procedures_component_coordinates_writer_factory	Subroutine
destroy_element	procedures_hetero_couples_factory	Subroutine
destroy_exploring	procedures_json_reports_factory	Subroutine
destroy_generating	procedures_json_reports_factory	Subroutine
destroy_line	procedures_parallelepiped_domains_factory	Subroutine
destroy_line	procedures_num_particles_factory	Subroutine
destroy_line	procedures_observables_changes_factory	Subroutine
destroy_line	procedures_observables_energies_factory	Subroutine
destroy_line	procedures_tower_sampler_factory	Subroutine
destroy_line	procedures_random_coordinates_factory	Subroutine
destroy_line	procedures_coordinates_copier_factory	Subroutine
destroy_line	procedures_changed_boxes_size_ratio_factory	Subroutine
destroy_line	procedures_move_tuner_factory	Subroutine
destroy_line	procedures_real_writer_factory	Subroutine
destroy_line	procedures_line_writer_factory	Subroutine
destroy_line	procedures_energies_writers_factory	Subroutine
destroy_line	procedures_rectangle_writer_factory	Subroutine
destroy_line	procedures_triangle_writer_factory	Subroutine
destroy_line	procedures_string_factory	Subroutine
destroy_line	procedures_hetero_couples_factory	Subroutine
destroy_number_line	procedures_string_factory	Subroutine
destroy_number_triangle	procedures_string_factory	Subroutine
destroy_rectangle	procedures_component_coordinates_reader_factory	Subroutine
destroy_rectangle	procedures_changes_success_writer_factory	Subroutine
destroy_rectangle	procedures_rectangle_writer_factory	Subroutine
destroy_rectangle	procedures_component_coordinates_writer_factory	Subroutine
destroy_rectangle_counters	procedures_observables_changes_factory	Subroutine
destroy_rectangles	procedures_logical_factory	Subroutine
destroy_static	procedures_dipolar_interactions_factory	Subroutine
destroy_swaps_counters	procedures_observables_changes_factory	Subroutine
destroy_teleportations_counters	procedures_observables_changes_factory	Subroutine
destroy_teleportations_successes	procedures_line_writer_factory	Subroutine
destroy_triangle	procedures_neighbour_cells_factory	Subroutine
destroy_triangle	procedures_move_tuner_factory	Subroutine
destroy_triangle	procedures_reals_factory	Subroutine
destroy_triangle_counters	procedures_observables_changes_factory	Subroutine
diff_triangle	procedures_triangle_observables	Subroutine
dipolar_energy_is_negative	procedures_dipolar_interactions_micro	Function	\[ \frac{1}{4 \pi \varepsilon} \left[ \frac{(\vec{\mu}_i\cdot\vec{\mu_j})}{r_{ij}^3} - 3 \frac{(\vec{\mu}_i\cdot\vec{r}_{ij}) (\vec{\mu}_j\cdot\vec{r}_{ij})}{r_{ij}^5} \right] \]
domains_overlap	procedures_parallelepiped_domain_macro	Function
Dot_construct	classes_directed_graph_writer	Subroutine
Dot_destroy	classes_directed_graph_writer	Subroutine
Dot_write	classes_directed_graph_writer	Subroutine
edge	procedures_box_size	Function
Equipartition_construct	classes_average_num_particles	Subroutine
Equipartition_destroy	classes_average_num_particles	Subroutine
Equipartition_set	classes_average_num_particles	Subroutine
error_exit	procedures_errors	Subroutine
Exploring_check	classes_box_size_checker	Subroutine
Exploring_construct	classes_box_size_checker	Subroutine
Exploring_destroy	classes_box_size_checker	Subroutine
Flat_get_height	classes_floor_penetration	Function
Flat_meet	classes_floor_penetration	Subroutine
Forgetful_construct	classes_box_size_memento	Subroutine
Forgetful_destroy	classes_box_size_memento	Subroutine
Forgetful_get	classes_box_size_memento	Function
Forgetful_save	classes_box_size_memento	Subroutine
Full_construct	classes_hetero_couples	Subroutine
Gaussian_get	classes_dirac_distribution_plus	Function	\[ r \mapsto \frac{1}{\sigma} \sqrt{\frac{2}{\pi}} \exp\left( -\frac{r^2}{2 \sigma^2} \right) \]
Gaussian_get_width	classes_dirac_distribution_plus	Function	\[ \mathsf{n}_\sigma \sigma \]
Gaussian_set	classes_dirac_distribution_plus	Subroutine
Generating_check	classes_box_size_checker	Subroutine
Generating_construct	classes_box_size_checker	Subroutine
Generating_destroy	classes_box_size_checker	Subroutine
Half_construct	classes_hetero_couples	Subroutine
i_component	procedures_mixture_inquirers	Interface
i_component_from_json	procedures_mixture_inquirers	Function
i_exclude_particle	procedures_transmutation_visitors	Function
ij_components	procedures_mixture_inquirers	Interface
ij_components_from_json	procedures_mixture_inquirers	Function
increase_coordinates_size	procedures_coordinates_micro	Subroutine
increase_nodes_size	module_list_node	Subroutine
increment_line	procedures_triangle_observables	Subroutine
increment_triangle	procedures_triangle_observables	Subroutine
Inter_construct	classes_radial_explorer	Subroutine
Inter_read_and_fill	classes_radial_explorer	Subroutine
Intra_construct	classes_radial_explorer	Subroutine
Intra_read_and_fill	classes_radial_explorer	Subroutine
is_inside_excluded	procedures_parallelepiped_domain_micro	Function
is_inside_included	procedures_parallelepiped_domain_micro	Function
list_is_array	procedures_short_interactions_inquirers	Function
list_is_linked_list	procedures_short_interactions_inquirers	Function
Lists_restore	classes_visitable_cells_memento	Subroutine
Lists_save	classes_visitable_cells_memento	Subroutine
LJ_get	classes_potential_expression	Function	\[ r \mapsto 4 \epsilon \left[\left(\frac{\sigma}{r}\right)^{12} - \left(\frac{\sigma}{r}\right)^6 \right] \]
LJ_set	classes_potential_expression	Subroutine
logical_from_json	procedures_property_inquirers	Function
make_dipoles_graph	procedures_exploration_inquirers	Interface
make_dipoles_graph_from_json	procedures_exploration_inquirers	Function
make_dipoles_graph_from_visitor	procedures_exploration_inquirers	Function
markov_orientation	procedures_random_number	Subroutine	From SMAC, Algorithm 1.24, p.44
max_distance	procedures_box_size	Function	\[ r_\text{max} = \frac{\sqrt{3}}{2} L \]
measure_chemical_potentials	procedures_exploration_inquirers	Interface
measure_chemical_potentials_from_json	procedures_exploration_inquirers	Function
measure_chemical_potentials_from_method	procedures_exploration_inquirers	Function
measure_pressure	procedures_exploration_inquirers	Interface
measure_pressure_from_json	procedures_exploration_inquirers	Function
measure_pressure_from_method	procedures_exploration_inquirers	Function
metropolis_algorithm	procedures_metropolis_algorithm	Function
mixture_can_exchange	procedures_mixture_inquirers	Interface
mixture_can_exchange_from_json	procedures_mixture_inquirers	Function
normal_random_number	procedures_random_number	Interface
normal_random_number_scalar	procedures_random_number	Subroutine	From SMAC, Algorithm 1.19, p.39
normal_random_number_vector	procedures_random_number	Subroutine
Null_add	classes_visitable_list	Subroutine
Null_add	classes_visitable_cells	Subroutine
Null_add	classes_mixture_total_moment	Subroutine
Null_add	classes_component_coordinates	Subroutine
Null_are_neighbour	classes_dipoles_neighbourhood	Subroutine
Null_are_outside_box	classes_visitable_walls	Function
Null_check_nums	classes_neighbour_cells	Subroutine
Null_clone	classes_dipolar_interactions_facade	Subroutine
Null_construct	classes_beta_pressure_excess	Subroutine
Null_construct	classes_external_field	Subroutine
Null_construct	classes_parallelepiped_domain	Subroutine
Null_construct	classes_reciprocal_lattice	Subroutine
Null_construct	classes_box_size_memento	Subroutine
Null_construct	classes_walls_visitor	Subroutine
Null_construct	classes_visitable_walls	Subroutine
Null_construct	classes_hard_contact	Subroutine
Null_construct	classes_visitable_list	Subroutine
Null_construct	classes_neighbour_cells	Subroutine
Null_construct	classes_visitable_cells	Subroutine
Null_construct	classes_pair_potential	Subroutine
Null_construct	classes_short_pairs_visitor	Subroutine
Null_construct	classes_mixture_total_moment	Subroutine
Null_construct	classes_component_dipole_moments	Subroutine
Null_construct	classes_tower_sampler	Subroutine
Null_construct	classes_changed_box_size	Subroutine
Null_construct	classes_move_tuner	Subroutine
Null_construct	classes_rectangle_writer	Subroutine
Null_construct	classes_triangle_writer	Subroutine
Null_construct	classes_real_writer	Subroutine
Null_construct	classes_line_writer	Subroutine
Null_construct	classes_changes_success_writer	Subroutine
Null_construct	classes_complete_coordinates_writer	Subroutine
Null_construct	classes_component_coordinates_writer	Subroutine
Null_construct	classes_particle_insertion_method	Subroutine
Null_construct	classes_volume_change_method	Subroutine
Null_construct	classes_maximum_box_compression_explorer	Subroutine
Null_construct	classes_dipolar_neighbourhoods_visitor	Subroutine
Null_construct	classes_plmc_propagator	Subroutine
Null_construct	classes_hetero_couples	Subroutine
Null_construct	classes_des_self_component	Subroutine
Null_construct	classes_des_reci_structure	Subroutine
Null_construct	classes_des_reci_weight	Subroutine
Null_construct	classes_des_reci_visitor	Subroutine
Null_construct	classes_dlc_weight	Subroutine
Null_construct	classes_dlc_structures	Subroutine
Null_construct	classes_dlc_visitor	Subroutine
Null_construct	classes_des_real_component	Subroutine
Null_construct	classes_des_real_pair	Subroutine
Null_copy	classes_coordinates_copier	Subroutine
Null_decrease_delta	classes_exchanged_boxes_size	Subroutine
Null_decrease_delta	classes_moved_coordinates	Subroutine
Null_decrease_delta	classes_changed_box_size	Subroutine
Null_destroy	classes_component_coordinates_reader	Subroutine
Null_destroy	classes_beta_pressure_excess	Subroutine
Null_destroy	classes_external_field	Subroutine
Null_destroy	classes_parallelepiped_domain	Subroutine
Null_destroy	classes_reciprocal_lattice	Subroutine
Null_destroy	classes_box_size_memento	Subroutine
Null_destroy	classes_walls_visitor	Subroutine
Null_destroy	classes_visitable_walls	Subroutine
Null_destroy	classes_hard_contact	Subroutine
Null_destroy	classes_visitable_list	Subroutine
Null_destroy	classes_neighbour_cells	Subroutine
Null_destroy	classes_visitable_cells	Subroutine
Null_destroy	classes_pair_potential	Subroutine
Null_destroy	classes_short_pairs_visitor	Subroutine
Null_destroy	classes_mixture_total_moment	Subroutine
Null_destroy	classes_average_num_particles	Subroutine
Null_destroy	classes_component_dipole_moments	Subroutine
Null_destroy	classes_component_coordinates	Subroutine
Null_destroy	classes_generating_algorithm	Subroutine
Null_destroy	classes_tower_sampler	Subroutine
Null_destroy	classes_random_coordinates	Subroutine
Null_destroy	classes_coordinates_copier	Subroutine
Null_destroy	classes_moved_coordinates	Subroutine
Null_destroy	classes_changed_box_size	Subroutine
Null_destroy	classes_move_tuner	Subroutine
Null_destroy	classes_rectangle_writer	Subroutine
Null_destroy	classes_triangle_writer	Subroutine
Null_destroy	classes_real_writer	Subroutine
Null_destroy	classes_line_writer	Subroutine
Null_destroy	classes_changes_success_writer	Subroutine
Null_destroy	classes_directed_graph_writer	Subroutine
Null_destroy	classes_complete_coordinates_writer	Subroutine
Null_destroy	classes_component_coordinates_writer	Subroutine
Null_destroy	classes_particle_insertion_method	Subroutine
Null_destroy	classes_volume_change_method	Subroutine
Null_destroy	classes_maximum_box_compression_explorer	Subroutine
Null_destroy	classes_dipolar_neighbourhoods_visitor	Subroutine
Null_destroy	classes_plmc_propagator	Subroutine
Null_destroy	classes_hetero_couples	Subroutine
Null_destroy	classes_dipolar_interactions_facade	Subroutine
Null_destroy	classes_des_self_component	Subroutine
Null_destroy	classes_des_reci_structure	Subroutine
Null_destroy	classes_des_reci_weight	Subroutine
Null_destroy	classes_des_reci_visitor	Subroutine
Null_destroy	classes_dlc_weight	Subroutine
Null_destroy	classes_dlc_structures	Subroutine
Null_destroy	classes_dlc_visitor	Subroutine
Null_destroy	classes_des_real_component	Subroutine
Null_destroy	classes_des_real_pair	Subroutine
Null_expression	classes_des_real_pair	Function
Null_get	classes_beta_pressure_excess	Function
Null_get	classes_permittivity	Function
Null_get	classes_beta_pressure	Function
Null_get	classes_external_field	Function
Null_get	classes_field_expression	Function
Null_get	classes_box_size_memento	Function
Null_get	classes_dirac_distribution_plus	Function
Null_get	classes_neighbour_cells	Function
Null_get	classes_potential_expression	Function	\[ r \mapto 0 \]
Null_get	classes_mixture_total_moment	Function
Null_get	classes_num_particles	Function
Null_get	classes_component_dipole_moments	Function
Null_get	classes_component_coordinates	Function
Null_get	classes_min_distance	Function
Null_get	classes_tower_sampler	Function
Null_get	classes_random_coordinates	Function
Null_get	classes_changed_box_size_ratio	Function
Null_get	classes_moved_coordinates	Function
Null_get	classes_hetero_couples	Function
Null_get	classes_des_reci_structure	Function
Null_get	classes_des_reci_weight	Function
Null_get	classes_dlc_weight	Function
Null_get	classes_dlc_structures	Function
Null_get_delta	classes_changed_box_size_ratio	Function
Null_get_delta	classes_maximum_box_compression	Function
Null_get_density	classes_component_chemical_potential	Function
Null_get_distance	classes_pair_potential	Function
Null_get_frequency_ratio	classes_exchanged_boxes_size	Function
Null_get_frequency_ratio	classes_changed_box_size	Function
Null_get_gap	classes_visitable_walls	Function
Null_get_global_bounds	classes_neighbour_cells	Function
Null_get_height	classes_floor_penetration	Function
Null_get_integer	classes_number_to_string	Function
Null_get_inv_pow_activity	classes_component_chemical_potential	Function
Null_get_max_distance	classes_dipoles_neighbourhood	Function
Null_get_norm	classes_component_dipole_moments	Function
Null_get_num	classes_component_dipole_moments	Function
Null_get_num	classes_component_coordinates	Function
Null_get_num	classes_component_coordinates_writer	Function
Null_get_num	classes_hetero_couples	Function
Null_get_num_choices	classes_generating_algorithm	Function
Null_get_num_choices	classes_tower_sampler	Function
Null_get_numbers	classes_reciprocal_lattice	Function
Null_get_origin	classes_parallelepiped_domain	Function
Null_get_ratio	classes_changed_box_size	Function
Null_get_ratios	classes_exchanged_boxes_size	Function
Null_get_real_array	classes_number_to_string	Function
Null_get_real_scalar	classes_number_to_string	Function
Null_get_size	classes_parallelepiped_domain	Function
Null_get_times_box_edge	classes_des_convergence_parameter	Function
Null_get_width	classes_hard_contact	Function
Null_get_width	classes_dirac_distribution_plus	Function
Null_increase_delta	classes_exchanged_boxes_size	Subroutine
Null_increase_delta	classes_moved_coordinates	Subroutine
Null_increase_delta	classes_changed_box_size	Subroutine
Null_index	classes_neighbour_cells	Function
Null_is_boxed	classes_parallelepiped_domain	Function
Null_is_dipolar	classes_mixture_total_moment	Function
Null_is_dipolar	classes_des_reci_structure	Function
Null_is_dipolar	classes_dlc_structures	Function
Null_is_inside	classes_parallelepiped_domain	Function
Null_is_inside	classes_neighbour_cells	Function
Null_is_sparse_in_z	classes_reciprocal_lattice	Function
Null_meet	classes_floor_penetration	Subroutine
Null_meet	classes_pair_potential	Subroutine
Null_meet	classes_des_self_component	Function
Null_meet	classes_des_real_pair	Function
Null_meet_contact	classes_hard_contact	Subroutine
Null_meet_min_distance	classes_hard_contact	Subroutine
Null_read	classes_component_coordinates_reader	Subroutine
Null_remove	classes_visitable_list	Subroutine
Null_remove	classes_visitable_cells	Subroutine
Null_remove	classes_mixture_total_moment	Subroutine
Null_remove	classes_component_coordinates	Subroutine
Null_rescale_all	classes_component_coordinates	Subroutine
Null_reset	classes_neighbour_cells	Subroutine
Null_reset	classes_visitable_cells	Subroutine
Null_reset	classes_mixture_total_moment	Subroutine
Null_reset	classes_tower_sampler	Subroutine
Null_reset	classes_plmc_propagator	Subroutine
Null_reset	classes_dipolar_interactions_facade	Subroutine
Null_reset	classes_des_reci_structure	Subroutine
Null_reset	classes_des_reci_weight	Subroutine
Null_reset	classes_dlc_weight	Subroutine
Null_reset	classes_dlc_structures	Subroutine
Null_reset	classes_des_real_pair	Subroutine
Null_reset_selectors	classes_generating_algorithm	Subroutine
Null_resize_only	classes_neighbour_cells	Function
Null_restore	classes_visitable_cells_memento	Subroutine
Null_save	classes_box_size_memento	Subroutine
Null_save	classes_visitable_cells_memento	Subroutine
Null_set	classes_permittivity	Subroutine
Null_set	classes_beta_pressure	Subroutine
Null_set	classes_field_expression	Subroutine
Null_set	classes_visitable_list	Subroutine
Null_set	classes_average_num_particles	Subroutine
Null_set	classes_num_particles	Subroutine
Null_set	classes_component_chemical_potential	Subroutine
Null_set	classes_component_coordinates	Subroutine
Null_set	classes_min_distance	Subroutine
Null_set	classes_changed_box_size_ratio	Subroutine
Null_set	classes_exchanged_boxes_size	Subroutine
Null_set	classes_dipoles_neighbourhood	Subroutine
Null_set	classes_des_convergence_parameter	Subroutine
Null_set_all	classes_component_coordinates	Subroutine
Null_set_min_distance	classes_maximum_box_compression_explorer	Subroutine
Null_set_real_pair_flag	classes_dipolar_interactions_facade	Subroutine
Null_set_skip_layers	classes_neighbour_cells	Subroutine
Null_skip	classes_neighbour_cells	Function
Null_target	classes_box_size_memento	Subroutine
Null_target	classes_visitable_cells	Subroutine
Null_target	classes_dipolar_interactions_facade	Subroutine
Null_target	classes_des_reci_structure	Subroutine
Null_target	classes_des_reci_weight	Subroutine
Null_target	classes_des_reci_visitor	Subroutine
Null_target	classes_dlc_weight	Subroutine
Null_target	classes_dlc_structures	Subroutine
Null_target	classes_dlc_visitor	Subroutine
Null_target	classes_des_real_component	Subroutine
Null_target	classes_des_real_pair	Subroutine
Null_translate	classes_visitable_cells	Subroutine
Null_try	classes_generating_algorithm	Subroutine
Null_try	classes_particle_insertion_method	Subroutine
Null_try	classes_volume_change_method	Subroutine
Null_try	classes_maximum_box_compression_explorer	Subroutine
Null_try	classes_dipolar_neighbourhoods_visitor	Subroutine
Null_try	classes_plmc_propagator	Subroutine
Null_tune	classes_move_tuner	Subroutine
Null_update_exchange	classes_des_reci_structure	Subroutine
Null_update_exchange	classes_dlc_structures	Subroutine
Null_update_switch	classes_des_reci_structure	Subroutine
Null_update_switch	classes_dlc_structures	Subroutine
Null_update_translation	classes_des_reci_structure	Subroutine
Null_update_translation	classes_dlc_structures	Subroutine
Null_update_transmutation	classes_des_reci_structure	Subroutine
Null_update_transmutation	classes_dlc_structures	Subroutine
Null_visit	classes_walls_visitor	Subroutine
Null_visit	classes_visitable_walls	Subroutine
Null_visit	classes_des_surf_mixture	Function
Null_visit	classes_dipolar_interactions_facade	Subroutine
Null_visit	classes_des_self_component	Function
Null_visit	classes_des_reci_visitor	Function
Null_visit	classes_dlc_visitor	Function
Null_visit	classes_des_real_component	Subroutine
Null_visit_contacts	classes_visitable_list	Subroutine
Null_visit_contacts	classes_visitable_cells	Subroutine
Null_visit_dipolar_neighbours	classes_visitable_list	Subroutine
Null_visit_dipolar_neighbours	classes_visitable_cells	Subroutine
Null_visit_energy	classes_visitable_list	Subroutine
Null_visit_energy	classes_visitable_cells	Subroutine
Null_visit_exchange	classes_des_surf_mixture	Function
Null_visit_exchange	classes_des_reci_visitor	Function
Null_visit_exchange	classes_dlc_visitor	Function
Null_visit_inter	classes_short_pairs_visitor	Subroutine
Null_visit_intra	classes_short_pairs_visitor	Subroutine
Null_visit_min_distance	classes_visitable_list	Subroutine
Null_visit_min_distance	classes_visitable_cells	Subroutine
Null_visit_switch	classes_des_reci_visitor	Function
Null_visit_switch	classes_dlc_visitor	Function
Null_visit_translation	classes_des_reci_visitor	Function
Null_visit_translation	classes_dlc_visitor	Function
Null_visit_transmutation	classes_des_surf_mixture	Function
Null_visit_transmutation	classes_des_reci_visitor	Function
Null_visit_transmutation	classes_dlc_visitor	Function
Null_write	classes_rectangle_writer	Subroutine
Null_write	classes_triangle_writer	Subroutine
Null_write	classes_changes_success_writer	Subroutine
Null_write	classes_directed_graph_writer	Subroutine
Null_write	classes_complete_coordinates_writer	Subroutine
Null_write	classes_component_coordinates_writer	Subroutine
Null_write_array	classes_real_writer	Subroutine
Null_write_integers	classes_line_writer	Subroutine
Null_write_reals	classes_line_writer	Subroutine
Null_write_scalar	classes_real_writer	Subroutine
num_boxes	procedures_environment_inquirers	Interface
num_boxes_from_json	procedures_environment_inquirers	Function
num_components	procedures_mixture_inquirers	Interface
num_components_from_json	procedures_mixture_inquirers	Function
observables_create_exploring	procedures_observables_factory	Subroutine
observables_create_generating	procedures_observables_factory	Subroutine
observables_destroy_exploring	procedures_observables_factory	Subroutine
observables_destroy_generating	procedures_observables_factory	Subroutine
Orientations_construct	classes_component_coordinates_reader	Subroutine
Orientations_construct	classes_component_coordinates	Subroutine
Orientations_destroy	classes_component_coordinates_reader	Subroutine
Orientations_destroy	classes_component_coordinates	Subroutine
Orientations_read	classes_component_coordinates_reader	Subroutine
Orientations_rescale_all	classes_component_coordinates	Subroutine
Orientations_set	classes_component_coordinates	Subroutine
Parallelepiped_construct	classes_parallelepiped_domain	Subroutine
Parallelepiped_destroy	classes_parallelepiped_domain	Subroutine
Parallelepiped_get_origin	classes_parallelepiped_domain	Function
Parallelepiped_get_size	classes_parallelepiped_domain	Function
pbc_3d_index	classes_neighbour_cells	Function
periodicity_is_xy	procedures_environment_inquirers	Function
periodicity_is_xyz	procedures_environment_inquirers	Function
Plain_construct	classes_density_explorer	Subroutine
Plain_destroy	classes_density_explorer	Subroutine
Plain_fill	classes_density_explorer	Subroutine
Plain_write	classes_density_explorer	Subroutine	\[ \rho = \left\langle \frac{N}{V} \right\rangle \]
plate_expression	procedures_field_expression_micro	Function	\( \vec{b}(x, z) \), cf. Plates_get: \[ b_x(x, z) = \ln \left[ \frac{(x + a/2)^2 + z^2}{(x - a/2)^2 + z^2} \right] \\ b_y(x, z) = 0 \\ b_z(x, z) = 2 \left[ \arctan \left( \frac{x + a/2}{z} \right) - \arctan \left( \frac{x - a/2}{z} \right) \right]. \]
Plates_get	classes_field_expression	Function	Let an infinitely thin plate of charge density \( \sigma \) which is finite in \( \vec{e}_x \) direction but not in \( \vec{e}_y \), cf. modules/environment/field/plate_field.tex. This plate creates an electric field at \( (x, z) \) of expression: \[ \vec{E}(x, z) = \frac{1}{4\pi \epsilon_0} \sigma \vec{b}(x, z) \] where \( \vec{b}(x, z) \) is defined in plate_expression.
Plates_set	classes_field_expression	Subroutine
plmc_catch_density_help	procedures_plmc_help	Subroutine
plmc_catch_exploring_help	procedures_plmc_help	Subroutine
plmc_catch_generating_help	procedures_plmc_help	Subroutine
plmc_catch_help_core	procedures_plmc_help	Subroutine
plmc_catch_radial_help	procedures_plmc_help	Subroutine
plmc_reset	procedures_plmc_resetter	Subroutine
plmc_set_num_snaps	procedures_plmc_iterations	Subroutine
plmc_set_num_steps	procedures_plmc_iterations	Subroutine
plmc_visit	procedures_plmc_visitor	Interface
plmc_write	procedures_plmc_writer	Interface
point_is_inside_box	procedures_parallelepiped_domain_micro	Function
Positions_construct	classes_component_coordinates_reader	Subroutine
Positions_construct	classes_component_coordinates	Subroutine
Positions_destroy	classes_component_coordinates_reader	Subroutine
Positions_destroy	classes_component_coordinates	Subroutine
Positions_read	classes_component_coordinates_reader	Subroutine
Positions_rescale_all	classes_component_coordinates	Subroutine
Positions_set	classes_component_coordinates	Subroutine
Random_construct	classes_coordinates_copier	Subroutine
Random_copy	classes_coordinates_copier	Subroutine
Random_destroy	classes_coordinates_copier	Subroutine
random_integer	procedures_random_number	Function
Raw_construct	classes_pair_potential	Subroutine
Raw_construct	classes_des_real_pair	Subroutine
Raw_destroy	classes_pair_potential	Subroutine
Raw_destroy	classes_des_real_pair	Subroutine
Raw_expression	classes_des_real_pair	Function
Raw_meet	classes_pair_potential	Subroutine
Raw_reset	classes_des_real_pair	Subroutine
Raw_set_domain	classes_pair_potential	Subroutine
Raw_set_domain	classes_des_real_pair	Subroutine	note cf. Tabulated_set_domain
read	procedures_complete_coordinates_reader	Interface
read_box_size	procedures_complete_coordinates_reader	Subroutine
read_complete_coordinates	procedures_complete_coordinates_reader	Subroutine
read_coordinates	procedures_complete_coordinates_reader	Subroutine
reci_number_1_sym	procedures_dipolar_interactions_micro	Function	Symmetry: half wave vectors in do loop: reci_number_1
reci_number_2_sym	procedures_dipolar_interactions_micro	Function	Symmetry: half wave vectors in do loop: reci_number_2
Rectangular_get	classes_dirac_distribution_plus	Function	\[ \frac{1}{\mathrm{d}r} \]
Rectangular_get_width	classes_dirac_distribution_plus	Function	\[ \mathrm{d}r \]
Rectangular_set	classes_dirac_distribution_plus	Subroutine
Rectangular_visit	classes_des_surf_mixture	Function	\[ U = \frac{1}{2\epsilon V} M_z^2 \]
Rectangular_visit_exchange	classes_des_surf_mixture	Function	\[ \Delta U = \frac{1}{2\epsilon V}[\mu_z^2 \pm 2 \mu_z M_z] \]
Rectangular_visit_transmutation	classes_des_surf_mixture	Function	\[ \Delta U = \frac{1}{2\epsilon V} [ \mu^{\prime 2}_z - \mu_z^2 + 2(\mu^\prime_z - \mu_z)(M_z - \mu_z) ] \]
Remove_acceptation_probability	classes_box_particle_exchange	Function	\[ P[N \to N-1] = \min \left( 1, \frac{N}{V \rho} e^{-\beta \Delta U_{N \to N-1}} a^{-N} \right) \]
Remove_define_exchange	classes_box_particle_exchange	Subroutine
Remove_increment_hit	classes_box_particle_exchange	Subroutine
Remove_increment_success	classes_box_particle_exchange	Subroutine
Remove_update_component	classes_box_particle_exchange	Subroutine
Remove_visit_dipolar	classes_box_particle_exchange	Subroutine
Remove_visit_field	classes_box_particle_exchange	Subroutine
Remove_visit_short	classes_box_particle_exchange	Subroutine
Remove_visit_walls	classes_box_particle_exchange	Subroutine
reset	procedures_short_interactions_resetter	Interface
reset	procedures_selectors_resetters	Interface
reset	procedures_dipolar_interactions_resetter	Subroutine	Some dipolar accumulators may need to be reset to reflect the current configuration.
reset_box_particle	procedures_selectors_resetters	Subroutine
reset_box_particles_swap	procedures_selectors_resetters	Subroutine
reset_box_volume_change	procedures_selectors_resetters	Subroutine
reset_boxes_particles_swap	procedures_selectors_resetters	Subroutine
reset_boxes_volume_exchange	procedures_selectors_resetters	Subroutine
reset_counters	module_changes_success	Interface
reset_neighbour_cells	procedures_short_interactions_resetter	Subroutine
reset_real	procedures_dipolar_interactions_resetter	Subroutine
reset_visitable_cells	procedures_short_interactions_resetter	Subroutine
restore	procedures_cells_memento	Subroutine
Rotation_define_move	classes_box_particle_move	Subroutine
Rotation_increment_hit	classes_box_particle_move	Subroutine
Rotation_increment_success	classes_box_particle_move	Subroutine
Rotation_update_component	classes_box_particle_move	Subroutine
Rotation_visit_dipolar	classes_box_particle_move	Subroutine
Rotation_visit_field	classes_box_particle_move	Subroutine
Rotation_visit_short	classes_box_particle_move	Subroutine
Rotation_visit_walls	classes_box_particle_move	Subroutine
save	procedures_cells_memento	Subroutine
Scalable_clone	classes_dipolar_interactions_facade	Subroutine
Scalable_construct	classes_dipolar_interactions_facade	Subroutine
Scalable_destroy	classes_dipolar_interactions_facade	Subroutine
Scalable_reset	classes_dipolar_interactions_facade	Subroutine
Scalable_set_real_pair_flag	classes_dipolar_interactions_facade	Subroutine
Scalable_target	classes_dipolar_interactions_facade	Subroutine
Scalable_visit	classes_dipolar_interactions_facade	Subroutine
set	procedures_readers_factory	Interface
set	procedures_potential_expression_factory	Subroutine
set	procedures_observables_energies_factory	Interface
set	procedures_random_seed_factory	Subroutine
set_are_dipolar	procedures_mixture_total_moments_factory	Subroutine
set_bounds	procedures_complete_coordinates_reader	Subroutine
set_can_exchange	procedures_mixture_properties	Subroutine
set_can_rotate	procedures_changes_properties	Subroutine
set_can_translate	procedures_changes_properties	Subroutine
set_density_type	procedures_density_explorer_factory	Subroutine
set_energies	procedures_observables_energies_factory	Subroutine
set_energies_triangle	procedures_observables_energies_factory	Subroutine
set_exist	procedures_mixture_properties	Subroutine
set_exp_kz	procedures_dipolar_interactions_micro	Subroutine	Set \( e^{k_{1:2} z} \) tabulation
set_field_expression	procedures_field_expression_factory	Subroutine
set_floor_penetration	procedures_floor_penetration_factory	Subroutine
set_fourier	procedures_dipolar_interactions_micro	Subroutine	Set fourier coefficients \( e^{i k_\mathsf{i} x_\mathsf{i}} \) tabulation
set_from_corner	procedures_centered_block_micro	Subroutine
set_from_json	procedures_readers_factory	Subroutine
set_from_seed	procedures_random_seed_factory	Subroutine
set_from_snap	procedures_readers_factory	Subroutine
set_from_urandom	procedures_random_seed_factory	Subroutine	cf. http://gcc.gnu.org/onlinedocs/gfortran/RANDOM_005fSEED.html
set_from_wall	procedures_centered_block_micro	Subroutine
set_have_orientations	procedures_mixture_properties	Subroutine
set_have_positions	procedures_mixture_properties	Subroutine
set_increase_factor	module_move_tuning	Subroutine
set_nums_particles	procedures_mixture_properties	Subroutine
set_selector	procedures_complete_coordinates_writer_factory	Subroutine
set_successes	module_changes_success	Interface
set_tuner_parameters	procedures_changes_factory	Subroutine
set_tuning_parameters	procedures_changes_factory	Subroutine
sphere_surface	procedures_elementary_geometry	Function	\[ S(r) = 4\pi r^2 \]
Spherical_visit	classes_des_surf_mixture	Function	\[ U = \frac{1}{6\epsilon V} \vec{M}^2 \]
Spherical_visit_exchange	classes_des_surf_mixture	Function	\[ \Delta U = \frac{1}{6\epsilon V} [ (\vec{\mu} \cdot \vec{\mu}) \pm 2(\vec{\mu} \cdot \vec{M}) ] \]
Spherical_visit_transmutation	classes_des_surf_mixture	Function	\[ \Delta U = \frac{1}{6\epsilon V} [ (\vec{\mu}^\prime_\mathsf{i} \cdot \vec{\mu}^\prime_\mathsf{i}) - (\vec{\mu}_\mathsf{i} \cdot \vec{\mu}_\mathsf{i}) + 2 (\vec{\mu}^\prime_\mathsf{i} - \vec{\mu}_\mathsf{i}) \cdot (\vec{M} - \vec{\mu}_\mathsf{i}) ] \]
standard_deviation	procedures_elementary_statistics	Function	\[ \Delta x = \sqrt{\frac{1}{N - 1} \sum_{i = 1}^N (x_i - \langle x \rangle)^2} \]
sum_line	procedures_triangle_observables	Function
Switch_acceptation_probability	classes_box_particles_swap	Function
Switch_define_swap	classes_box_particles_swap	Subroutine
Switch_increment_hit	classes_box_particles_swap	Subroutine
Switch_increment_success	classes_box_particles_swap	Subroutine
Switch_update_components	classes_box_particles_swap	Subroutine
Switch_visit_dipolar	classes_box_particles_swap	Subroutine
Switch_visit_field	classes_box_particles_swap	Subroutine
Switch_visit_short	classes_box_particles_swap	Subroutine
Switch_visit_walls	classes_box_particles_swap	Subroutine
Tabulated_construct	classes_pair_potential	Subroutine
Tabulated_construct	classes_des_real_pair	Subroutine
Tabulated_create_tabulation	classes_des_real_pair	Subroutine
Tabulated_destroy	classes_pair_potential	Subroutine
Tabulated_destroy	classes_des_real_pair	Subroutine
Tabulated_expression	classes_des_real_pair	Function	Linear interpolation
Tabulated_meet	classes_pair_potential	Subroutine
Tabulated_reset	classes_des_real_pair	Subroutine
Tabulated_set_domain	classes_pair_potential	Subroutine
Tabulated_set_domain	classes_des_real_pair	Subroutine
Tabulated_set_tabulation	classes_pair_potential	Subroutine
total_volume_can_change	procedures_environment_inquirers	Interface
total_volume_can_change_from_beta_pressure	procedures_environment_inquirers	Function
total_volume_can_change_from_json	procedures_environment_inquirers	Function
Translation_define_move	classes_box_particle_move	Subroutine
Translation_increment_hit	classes_box_particle_move	Subroutine
Translation_increment_success	classes_box_particle_move	Subroutine
Translation_update_component	classes_box_particle_move	Subroutine
Translation_visit_dipolar	classes_box_particle_move	Subroutine
Translation_visit_field	classes_box_particle_move	Subroutine
Translation_visit_short	classes_box_particle_move	Subroutine
Translation_visit_walls	classes_box_particle_move	Subroutine
Transmutation_acceptation_probability	classes_box_particles_swap	Function	\[ P[i \in I \to j \in J] = \min \left( 1, \frac{N_I}{N_J + 1} \frac{\rho_J}{\rho_I} e^{-\beta \Delta U_{i \to j}} \frac{a_I^{-N_I}}{a_J^{-N_J}} \right) \]
Transmutation_define_swap	classes_box_particles_swap	Subroutine
Transmutation_increment_hit	classes_box_particles_swap	Subroutine
Transmutation_increment_success	classes_box_particles_swap	Subroutine
Transmutation_update_components	classes_box_particles_swap	Subroutine
Transmutation_visit_dipolar	classes_box_particles_swap	Subroutine
transmutation_visit_dipolar	procedures_transmutation_visitors	Subroutine
Transmutation_visit_field	classes_box_particles_swap	Subroutine
transmutation_visit_field	procedures_transmutation_visitors	Subroutine
Transmutation_visit_short	classes_box_particles_swap	Subroutine
transmutation_visit_short	procedures_transmutation_visitors	Subroutine
Transmutation_visit_walls	classes_box_particles_swap	Subroutine
transmutation_visit_walls	procedures_transmutation_visitors	Subroutine
triangle_observables_add	procedures_triangle_observables	Interface
triangle_observables_diff	procedures_triangle_observables	Interface
triangle_observables_init	procedures_triangle_observables	Subroutine
triangle_observables_sum	procedures_triangle_observables	Function
Unscalable_clone	classes_dipolar_interactions_facade	Subroutine
Unscalable_construct	classes_dipolar_interactions_facade	Subroutine
Unscalable_destroy	classes_dipolar_interactions_facade	Subroutine
Unscalable_reset	classes_dipolar_interactions_facade	Subroutine
Unscalable_set_real_pair_flag	classes_dipolar_interactions_facade	Subroutine
Unscalable_target	classes_dipolar_interactions_facade	Subroutine
Unscalable_visit	classes_dipolar_interactions_facade	Subroutine
update	procedures_transmutation_updaters	Subroutine
update_add	procedures_exchange_updaters	Subroutine
update_remove	procedures_exchange_updaters	Subroutine
use_domain	procedures_environment_inquirers	Function
use_permittivity	procedures_environment_inquirers	Interface
use_permittivity_from	procedures_environment_inquirers	Function
use_permittivity_from_json	procedures_environment_inquirers	Function
use_reciprocal_lattice	procedures_environment_inquirers	Interface
use_reciprocal_lattice_from	procedures_environment_inquirers	Function
use_reciprocal_lattice_from_json	procedures_environment_inquirers	Function
use_walls	procedures_environment_inquirers	Interface
use_walls_from_floor_penetration	procedures_environment_inquirers	Function
use_walls_from_json	procedures_environment_inquirers	Function
use_walls_from_walls	procedures_environment_inquirers	Function
visit	procedures_short_interactions_visitor	Interface
visit	procedures_plmc_visitor	Subroutine
visit	procedures_dipolar_interactions_visitor	Interface
visit_add	procedures_exchange_visitors	Interface
visit_add	procedures_dipoles_field_interaction	Function
visit_add_dipolar	procedures_exchange_visitors	Subroutine
visit_add_short	procedures_exchange_visitors	Subroutine
visit_all	procedures_visit_condition	Function
visit_cells_contacts	procedures_short_interactions_visitor	Subroutine
visit_cells_energies	procedures_short_interactions_visitor	Subroutine
visit_cells_min_distance	procedures_short_interactions_visitor	Subroutine
visit_component	procedures_dipoles_field_interaction	Function
visit_des_real	procedures_dipolar_interactions_visitor	Subroutine
visit_des_self	procedures_dipolar_interactions_visitor	Subroutine
visit_different	procedures_visit_condition	Function
visit_dipolar	procedures_transmutation_visitors	Interface
visit_dipolar	procedures_dipolar_interactions_visitor	Subroutine
visit_dipolar_neighbours	procedures_short_interactions_visitor	Subroutine
visit_exchange	procedures_dipoles_field_interaction	Function
visit_field	procedures_dipolar_interactions_visitor	Subroutine
visit_lower	procedures_visit_condition	Function
visit_remove	procedures_exchange_visitors	Interface
visit_remove	procedures_dipoles_field_interaction	Function
visit_remove_dipolar	procedures_exchange_visitors	Subroutine
visit_remove_short	procedures_exchange_visitors	Subroutine
visit_rotation	procedures_dipoles_field_interaction	Function
visit_short	procedures_short_interactions_visitor	Subroutine
visit_short	procedures_transmutation_visitors	Interface
visit_short_inter	procedures_short_interactions_visitor	Subroutine
visit_short_intra	procedures_short_interactions_visitor	Subroutine
visit_translation	procedures_dipoles_field_interaction	Function
visit_walls	procedures_short_interactions_visitor	Subroutine
Walled_construct	classes_parallelepiped_domain	Subroutine
Walled_destroy	classes_parallelepiped_domain	Subroutine
Walled_get_origin	classes_parallelepiped_domain	Function
Walled_get_size	classes_parallelepiped_domain	Function
warning_continue	procedures_errors	Subroutine
write_coordinates	procedures_writers_inquirers	Interface
write_coordinates_from_json	procedures_writers_inquirers	Function
write_energies	procedures_plmc_writer	Subroutine
write_exploring_observables	procedures_plmc_writer	Subroutine
write_generating_observables	procedures_plmc_writer	Subroutine
XY_check	classes_periodic_box	Subroutine
XY_check_nums	classes_neighbour_cells	Subroutine
XY_folded	classes_periodic_box	Function
XY_get	classes_beta_pressure_excess	Function	\[ \frac{1}{2 S H} \left\langle \sum_{\mathsf{i} < \mathsf{j}} \frac{\sigma^2 - z_{\mathsf{i} \mathsf{j}}^2}{\sigma} (r_{\mathsf{i} \mathsf{j}} = \sigma_+) \right\rangle_{S, H} \]
XY_get	classes_changed_box_size_ratio	Function	\[ \frac{S^\prime}{S} = e^{\mathrm{rand}[-1/2, +1/2] \delta} \]
XY_get_delta	classes_maximum_box_compression	Function	\[ \delta = 4 \ln \left( \frac{r_{1:2, \text{min}}}{\sigma} \right) \]
XY_get_ratios	classes_exchanged_boxes_size	Function	\[ \frac{S_{\boldsymbol{I}}^\prime}{S_{\boldsymbol{I}}} = \frac{\left( 1 + \frac{S_{\boldsymbol{I}}}{S_{\boldsymbol{J}}} \right) e^{\mathrm{rand}[-1/2, +1/2] \delta}} {1 + \frac{S_{\boldsymbol{I}}}{S_{\boldsymbol{J}}} e^{\mathrm{rand}[-1/2, +1/2] \delta}} \] \[ \frac{S_{\boldsymbol{J}}^\prime}{S_{\boldsymbol{J}}} = \frac{S_{\boldsymbol{I}}^\prime}{S_{\boldsymbol{I}}} e^{-\mathrm{rand}[-1/2, +1/2] \delta} \]
XY_meet_contact	classes_hard_contact	Subroutine	\[ \frac{\sigma^2 - z^2}{\sigma} (r = \sigma_+) \]
XY_meet_min_distance	classes_hard_contact	Subroutine
XY_set_skip_layers	classes_neighbour_cells	Subroutine
XYZ_check	classes_periodic_box	Subroutine
XYZ_check_nums	classes_neighbour_cells	Subroutine
XYZ_folded	classes_periodic_box	Function	from SMAC, algorithm 2.5 & 2.6, p.91
XYZ_get	classes_beta_pressure_excess	Function	\[ \frac{1}{3 V} \left\langle \sum_{\mathsf{i} < \mathsf{j}} \sigma (r_{\mathsf{i} \mathsf{j}} = \sigma_+) \right\rangle_V \]
XYZ_get	classes_changed_box_size_ratio	Function	\[ \frac{V^\prime}{V} = e^{\mathrm{rand}[-1/2, +1/2] \delta} \]
XYZ_get_delta	classes_maximum_box_compression	Function	\[ \delta = 6 \ln \left( \frac{r_\text{min}}{\sigma} \right) \]
XYZ_get_ratios	classes_exchanged_boxes_size	Function	\[ \frac{V_{\boldsymbol{I}}^\prime}{V_{\boldsymbol{I}}} = \frac{\left( 1 + \frac{V_{\boldsymbol{I}}}{V_{\boldsymbol{J}}} \right) e^{\mathrm{rand}[-1/2, +1/2] \delta}} {1 + \frac{V_{\boldsymbol{I}}} {V_{\boldsymbol{J}}}e^{\mathrm{rand}[-1/2, +1/2] \delta}} \] \[ \frac{V_{\boldsymbol{J}}^\prime}{V_{\boldsymbol{J}}} = \frac{V_{\boldsymbol{I}}^\prime}{V_{\boldsymbol{I}}} e^{-\mathrm{rand}[-1/2, +1/2] \delta} \]
XYZ_meet_contact	classes_hard_contact	Subroutine	\[ \sigma (r = \sigma_+) \]
XYZ_meet_min_distance	classes_hard_contact	Subroutine
XYZ_set_skip_layers	classes_neighbour_cells	Subroutine
XZ_construct	classes_density_explorer	Subroutine
XZ_destroy	classes_density_explorer	Subroutine
XZ_fill	classes_density_explorer	Subroutine
XZ_write	classes_density_explorer	Subroutine
Yukawa_get	classes_potential_expression	Function	\[ r \mapsto \frac{\epsilon}{r} \exp(-\alpha r) \]
Yukawa_set	classes_potential_expression	Subroutine
Z_construct	classes_density_explorer	Subroutine
Z_destroy	classes_density_explorer	Subroutine
Z_fill	classes_density_explorer	Subroutine
Z_write	classes_density_explorer	Subroutine	\[ \rho(z) = \left\langle \frac{1}{L_x L_y}\frac{\mathrm{d} N}{\mathrm{d} z}(z) \right\rangle \]

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